Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01830 ATGCAATCGTTATCGTTAAGTATGAGTCTTCGGGGGAGTTTAGCGAATTTTCTGTTGCTGGGTTCGGAGGCCAGAGTGAGAAAAAGGAGTGCCGTCGTAGCGTGTGCTTCCGAGGGAGACAGTGGTAGCACCAGCTCCTTTCTCTCTAGGACCCAAACCTACGCCCTTCTCAAGCAACAGTTGCATGTCGCTGCTAAATCCGAGGATTACAAGGAAGCGGCTAGAATTCGTGACTCGTTGAAGCTGTTTGAGGAGGAGGAGCCTGTTTTGCGTCTCAGGAGACTGTTGAAGGAAGCAGTTGCTGAAGAGAGATTCCAGGGAATCAGGGTTCAAGTTAGGAGTGTGTATATAGAGGGTAGAAGTCAGCCTTCAAAGGGGCTATACTTCTTTGCATATAGAATAAGAATTACCAATAACTCAGACCACCCTGTTCAACTTCTTAGAAGGCATTGGATTATAACTGATGCCAATGGGAGAACGGAAAATGTCTGGGGAATTGGAGTTGTTGGTGAACAGCCATTAATACTTCCTGGGAATAGTTTTGAGTACTCTTCAGCATGCCCACTGAGCACACCAAATGGAAGAATGGAAGGTGACTTTGAGATGATCCATGTTGATAGAGTGGGCTCACGATCATTCAATGTGGCCATTGCCCCGTTTTCTCTCTCTCTGCTTGGAGATGATGATGGTTGTAATATTTAG 702 0.4615 MQSLSLSMSLRGSLANFLLLGSEARVRKRSAVVACASEGDSGSTSSFLSRTQTYALLKQQLHVAAKSEDYKEAARIRDSLKLFEEEEPVLRLRRLLKEAVAEERFQGIRVQVRSVYIEGRSQPSKGLYFFAYRIRITNNSDHPVQLLRRHWIITDANGRTENVWGIGVVGEQPLILPGNSFEYSSACPLSTPNGRMEGDFEMIHVDRVGSRSFNVAIAPFSLSLLGDDDGCNI 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01830 233 Hamap Protein ApaG [apaG]. 101 232 IPR023065 -
Cca11g01830 233 SUPERFAMILY C-terminal UvrC-binding domain of UvrB 52 84 IPR036876 -
Cca11g01830 233 PANTHER OS05G0170800 PROTEIN 106 229 - -
Cca11g01830 233 PANTHER OS05G0170800 PROTEIN 31 106 - -
Cca11g01830 233 Gene3D ApaG domain 98 227 IPR036767 -
Cca11g01830 233 Pfam ApaG domain 120 203 IPR007474 -
Cca11g01830 233 ProSiteProfiles ApaG domain profile. 102 229 IPR007474 -
Cca11g01830 233 SUPERFAMILY ApaG-like 106 223 IPR036767 -
Cca11g01830 233 ProSiteProfiles UVR domain profile. 51 86 IPR001943 GO:0005515
Cca11g01830 233 Pfam UvrB/uvrC motif 57 85 IPR001943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01830 Cca-Chr11 43314814 43317816 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01830 - K06195 gmx:100782176 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01830 11 43314814 43317816 Cca11g01830 11 43314814 43317816 ECH
Cca11g01830 11 43314814 43317816 Cca03g00461 03 7250591 7255005 PCT