Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00461 ATGCAGTCGTTGAGCGCCAAGACTTGCGTGGGTTCGAGGTTAGCGGTTTTAACGAACCCCGAGGCGAGGACTACGAGGACGCAACGCGTGAGTTGTCCGAACCGCAGGAATTGGAGCAGCGCCATTGTTTCGTGCGGTTCGGAGAGGAACGGGACCGATGGAACCGGCTCGCCCGGAGGTTCCAACGGTTCGTTTTTGTCTCCGAGCCATAATTACGCGATCCTCAAGCACCGGATGGAGGTGGCGGCGAAATCCGAGTATTACGAAGAAGCGGCGAGGATTCGCGACTCGCTCAAGTGCATCGAAGAGGAGGTGCCTGTTCTGCGTCTAAGGAGATTGTTGAAGGAAGCCGTTGCTGATGAGAGGTTTCAGGACGCAGCTAGATATCGTGATGAGCTAAAAGCAATTGCCCCACATTCTCTCTTAAAATGCTCAAGTGATGCTACAACATTGGGAATCCGGGTCCAAGTTAGGAGTGCATACATAGAGGGCAGAAGTGAACATTCAGAGGAGCTATATTTCTTTGAATATAAAATCAAAATTACCAATAACACGAACCGCCCTGTTCAACTTCTCAGAAGACATTGGATTATAACTGATGCTAATGGGAAAACTGAAAATTTCTGGGGAATTGGTGTTGTTGGTGAACAGCCAGCTATATTTCCTTGGTCTACTTTTGAATTCTCTTCCACATGTCCATTAAACACACAAAATGGTAGAATGGAAGGTGACTTTGAGATGATTCATGTTGATCGAGTAGGTCCTAGGGCATTTAATGTGGCAATTGCCCCTTTCTCTCTCTCTCTACTTGGAGATGATGAAGGTGAAATTATTTGA 837 0.4731 MQSLSAKTCVGSRLAVLTNPEARTTRTQRVSCPNRRNWSSAIVSCGSERNGTDGTGSPGGSNGSFLSPSHNYAILKHRMEVAAKSEYYEEAARIRDSLKCIEEEVPVLRLRRLLKEAVADERFQDAARYRDELKAIAPHSLLKCSSDATTLGIRVQVRSAYIEGRSEHSEELYFFEYKIKITNNTNRPVQLLRRHWIITDANGKTENFWGIGVVGEQPAIFPWSTFEFSSTCPLNTQNGRMEGDFEMIHVDRVGPRAFNVAIAPFSLSLLGDDEGEII 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00461 278 Gene3D ApaG domain 143 273 IPR036767 -
Cca03g00461 278 Pfam UvrB/uvrC motif 109 136 IPR001943 GO:0005515
Cca03g00461 278 ProSiteProfiles UVR domain profile. 104 139 IPR001943 GO:0005515
Cca03g00461 278 ProSiteProfiles UVR domain profile. 69 104 IPR001943 GO:0005515
Cca03g00461 278 Pfam ApaG domain 165 248 IPR007474 -
Cca03g00461 278 MobiDBLite consensus disorder prediction 45 64 - -
Cca03g00461 278 ProSiteProfiles ApaG domain profile. 147 274 IPR007474 -
Cca03g00461 278 Coils Coil 84 104 - -
Cca03g00461 278 SUPERFAMILY C-terminal UvrC-binding domain of UvrB 73 103 IPR036876 -
Cca03g00461 278 PANTHER OS05G0170800 PROTEIN 18 274 - -
Cca03g00461 278 SUPERFAMILY ApaG-like 149 268 IPR036767 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00461 Cca-Chr3 7250591 7255005 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00461 - K06195 gmx:100799029 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00461 03 7250591 7255005 Cca03g00461 03 7250591 7255005 ECH
Cca11g01830 11 43314814 43317816 Cca03g00461 03 7250591 7255005 PCT