Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01824 ATGGCTGCTATAGAAATTGTGGACTTATGCAGTGATGATGAAGGGGAAAATGTTTCCAAAGCTGCTAGTAGTGCAAAGAAACAGAATGTGGCCAAGCACCAGAGACCTCAAACTCAAACTCAAACTCATTATTCTGCCGTCCAAGTTTCTGATAAAAGCTCTAGTGCTCGAAGCACTAGTCACAGTTATTCCAGTGCAATGGAGCAGGAACTGTTGCATGTTCAAGACACACTCTTTTCTCCATCAATTTCTAGGAACTTTTGGAAAGCAGGAAACAATGATAGTGCCCTTGCCTCCAAACTCACCACCTTCCAAAATGCTGAAAACTACTTGCATGTCCACCCTTCGTTCCTTCACTCGAATGCGACTTCGCATAAGTGGGCATTCGGTGCTATAGCTGAGCTTCTTGATAATGCAGTTGATGAGACCCAAAATGGGGCTACTTTTGTTCTTGTAGATAAAATTTTCAATCCAAAAGATGGAAGTCCAGCCTTGTTGATTCAAGACGATGGTGGTGGAATGGATCCACAAGCAATGCTTCAATGCATGAGCTTTGGATTTTCAGACAAGTCAAAAATTGCAATTGGACAGTATGGAAATGGCTTTAAGACTGGTAGCATGAGACTGGGTGCAGATGTCATTGTCTTCAGCTGCCACATGAATAACATGATATTGACTCGTAGCATTGGACTTCTGTCTTACACATTCTTGATGCAAAAACTGTTTGACAGAATTGTAATCCCCATGGTGAATTATAAGTTTGATCCATCAACTGGATGCTTGCAAATACTAAATGACAAAGAATATTTTAGGTCTAATTTATCCATACTATTGCGCTGGTCTCCATATATATCAGAAGCAGAACTTCTGAAACAATTTGATGACATTGGAAATCATGGTACCAAAATTATTATTTTCAATTTATGGTTCAACGATGATGGCAATTTGGAGCTAGACTTTGATTCTGATCCTGAGGATATATGTATTGCTGGGCATATCAAGAAGATTGACACAATTCCTTCCTGGAAGATAGTAAATGAGGAACACATTGGCAACCGTTTTCATTATTCTTTACGTGCTTACTTCTCCATATTGTACTTGGGGATACCAGAAAGTTTTAGAATTATATTGCGAGGACAAGTTGTGAAGCTACATAACATTGCAGATGATCTCAAATATACTGAATTTATCTTGTATAAACCACACAGTGGTGATTCTGAAGAGGGAATAGTTGTAACTACAATTGGATTTGTTAAGGAAGCTCCTGAAGTGAACGTCCGTGGCTTCAATGTATATCACAAAAATCGGCTTATACTGCCATTTTGGAAGGTTGTGAACTATTCACGTAGTAGGGGTAGAGGTGTAGTTGGTATCTTGCGAGCTGATTATCTTGAGCCAACTCATAATAAACAAGATTTTGAGAGAAGTTCCCTGTTTCAAAAGCTTGGAGTACGCCTGAAGGAAATGACATGGGAGTACTGGGATTGTCACTGTCATCTAATTGGGTATCAGGAAAGCAAAGTTTCTCATTGCGCTTCAGCTGCATCTCTTAATAAGAGGAAGACACATGGAAGTATAGACCTTCAAAAGATGAAAAGGAAAGCAGTGGAAGAAAATGTTACAGTTGCTGGATGCGATCAGAATGTGCTGATTAATGCATCTCCTACAGATCAGACGATAGACCCAGAAGTTATGAAGTTGATGAAAGTGAACAAAAAACTCTTACAACAATGTTTAGAATATGAAAAGGCAGAGGAAGAACTTAATCTTAAGGTTATGCAGCTTAGAAATCAAATTGAGGAAGCTCATCGTGTGTATGATACTCTTTTGGCTAAAGCACAGCCCCATGAATTATGGTAA 1860 0.3909 MAAIEIVDLCSDDEGENVSKAASSAKKQNVAKHQRPQTQTQTHYSAVQVSDKSSSARSTSHSYSSAMEQELLHVQDTLFSPSISRNFWKAGNNDSALASKLTTFQNAENYLHVHPSFLHSNATSHKWAFGAIAELLDNAVDETQNGATFVLVDKIFNPKDGSPALLIQDDGGGMDPQAMLQCMSFGFSDKSKIAIGQYGNGFKTGSMRLGADVIVFSCHMNNMILTRSIGLLSYTFLMQKLFDRIVIPMVNYKFDPSTGCLQILNDKEYFRSNLSILLRWSPYISEAELLKQFDDIGNHGTKIIIFNLWFNDDGNLELDFDSDPEDICIAGHIKKIDTIPSWKIVNEEHIGNRFHYSLRAYFSILYLGIPESFRIILRGQVVKLHNIADDLKYTEFILYKPHSGDSEEGIVVTTIGFVKEAPEVNVRGFNVYHKNRLILPFWKVVNYSRSRGRGVVGILRADYLEPTHNKQDFERSSLFQKLGVRLKEMTWEYWDCHCHLIGYQESKVSHCASAASLNKRKTHGSIDLQKMKRKAVEENVTVAGCDQNVLINASPTDQTIDPEVMKLMKVNKKLLQQCLEYEKAEEELNLKVMQLRNQIEEAHRVYDTLLAKAQPHELW 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01824 619 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 128 327 IPR036890 -
Cca11g01824 619 MobiDBLite consensus disorder prediction 17 62 - -
Cca11g01824 619 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 5 515 IPR045261 GO:0016887
Cca11g01824 619 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 517 615 IPR045261 GO:0016887
Cca11g01824 619 Gene3D - 105 308 IPR036890 -
Cca11g01824 619 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 130 224 - -
Cca11g01824 619 MobiDBLite consensus disorder prediction 15 62 - -
Cca11g01824 619 Coils Coil 567 612 - -
Cca11g01824 619 Pfam Morc6 ribosomal protein S5 domain 2-like 356 494 IPR041006 -
Cca11g01824 619 PANTHER PROTEIN MICRORCHIDIA 6 517 615 - -
Cca11g01824 619 PANTHER PROTEIN MICRORCHIDIA 6 5 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01824 Cca-Chr11 43247554 43256859 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01824 - - gmx:100779850 863.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00451 03 7065777 7083876 Cca11g01824 11 43247554 43256859 ECH
Cca11g01824 11 43247554 43256859 Cca11g01824 11 43247554 43256859 ECH