Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00451 ATGGGTCTTACAGAAATTGTGGAATTATCCAGTGATGATGAAAGCGAAAAGGTTGGTTTCAAAGCTGTTAAGTTGGAGAAAGATTTTGTTATGGATGCAAAGCAATATAATGAGACTGACAAAGGTCGACTAGCCAAGCGTAAGAGATCTCGGAGTCATACTACTCGACAAGATTCTGAAGAAAATATAAGTTCTAATGGTCCAAGTACAGGTCATAGTAGCTCCAGTGTATTGGAGCAAGGGCCATCGCCAATGGATGACACCGGTATTTCTTATGCATCACCCATCGGTTCAGCGCCCCTGTGTAGGCAGTTTTGGAAAGCTGGACACTATGATGATGGGCTTGGTTCTAAAGTCACAGTCCAAAATGCTAAAAATTATCTACATGTGCACCCAATGTTCCTCCACTCAAATGCAACTTCGCATAAGTGGGCATTTGGTGCCATAGCAGAGCTTCTTGATAATGCAGTTGATGAGATCCAAAATGGGGCTACCTTTGTCATTGTAGATAAAACTTCAAATCCAAGGGATGGAAGCCCAGCACTGTTGATTCAAGATGATGGTGGTGGAATGGATCCGGAAGCAATGCGTCGTTGCATGAGTTTTGGATTTTCAGATAAGAAGTCACAGTTTGCTATTGGACGCTATGGAAATGGCTTCAAGACCAGTAGTATGAGGCTTGGTGCAGATGTCATAGTCTTCAGTTGCCATCTAAATAATAGGATTTTGACTCAAAGCATTGGACTTCTGTCATATACATATTTGACACAAACACAGCTTGACAGAATAGTAGTGCCCATGGTGAATTATGAGTTTAATACATCAACTGGTTCGTTGGAAATATTAAATGGAAATGAGCATTTTGTGGCTAATTTATCCTTGCTGTTGCGTTGGTCACCATATTCATCAGAAGCAGATCTTCTAAAACAATTTGATGACATTGGATCTCATGGTACTAAAGTTATTATCTATAATTTGTGGTGCAACGATGATGGGAATTTGGAGTTAGACTTTGAGACAGATCCGTCGGACATTCGTATTGCCGGGGATATCAAGAAGATTGATACACTTCCTGCCTGGAAGAGTATAAATGAGGAACACATTGCTAATCGGTTCCGTTACTCTTTACATGTATATATGTCCATATTGTACTTGAAGATACCGGAAAGTTTTCAAATTATATTGCGAGGGCAAGTTGTGAAGCCACACAACATTGCTGATGATCTTAAATATCCTCAGTTTGTTAAATATGCTCCACAAATTGGTGGATCAGTAAAGGGAACAGCTTTGACAGTCACAACAATTGGATTTCTTAAGGACGCACCTCAAGTCAATGTCCATGGTTTCAATGTATATCATAAAAATCGGCTTATACTGCCATTTTGGCAGGTTGTAAGCTATTTCGACAGTAGGGGTAGAGGAGTTGTTGGTATCCTGCAAGCAGATTTTATTGAGCCAACTCATAACAAACAAGATTTTGAGAGAACGTCCCTGTTTCAAAAGCTTGAAGTGCGATTGAAGGAGATGACATGGGAATACTGGGATACACATTGTACATTGTTTGGCTATAAGGAAAAGAAGAAGCTTCCACCTGGGGTTACGCCAGTGTATCCATTGTTACGGAAACCACTTTCTGTAGAAAAACCGGTCATACTGAACAAAAGTTCCTCCACTGTTGTCAATACAAAAGAAGTATATGGGAATTCTGAACAGTGCTCCACAAATCTGCGAATAAGATCCGAGCAAGGTTCCAATAATAAGAGGAAGCCACATGAACTGGTGGTAGACCTTCAGAATATGAAAAGGTTTGCAAGGAAAGATAATGTAACCCATGTTGGTTTCAGTCAGAATAATAAGATCACTGCAACTCTAGATGACCAAGTGGTAGACCAGAAGACCATAGACTTAATGCAACAAAACAAGAAACTGCATGCAAAATGTTTAGAATTTGAAAAGACAGAAGAAGAACTTAATCTCAAGGTGACGACGCTTAGAAGTAAAATTCAAGCAGCCCAAGATGAGTATAATCGGCTTTTGGCTGAAGTGAAGTCTCTAGAAGTGAAAGAAGATCTTTGGCTTACTACCAGGTTTTGGGGAAAGAAAGGATCACAGGGTCTGAGTCCCAGTTTTTCAGTCAGGCATCCTGTGTATCATGTATATGGAAtcctCCATCATCTCCGTCTGTCAGTCCTTCAACGTAGCTGGCTTCAACCATCGGCAACCAGTTCGACCTCGATCTCCTCGTCGGCTACTCCATCCTCTCCATCTACCATCCCTCTAGCATCGACAACTCCGACCGTCAGTAACCAGTCTAACCCCCGTTTTCTCGTTAACTACTCCATCCTCTCTGTCTGCCAGCCCTCCAACACCATCGACTCTGATCGTCGGCAACCAGTCCAATCCCGATTTCCTCATGGACTACTCCATCCTCTCCTGCTTGCCAACCCTCCAGCATCGTCGACTTCGACCCCAAgcagtggaagcagaagcacgacttcgttcgtgctgtag 2511 0.4122 MGLTEIVELSSDDESEKVGFKAVKLEKDFVMDAKQYNETDKGRLAKRKRSRSHTTRQDSEENISSNGPSTGHSSSSVLEQGPSPMDDTGISYASPIGSAPLCRQFWKAGHYDDGLGSKVTVQNAKNYLHVHPMFLHSNATSHKWAFGAIAELLDNAVDEIQNGATFVIVDKTSNPRDGSPALLIQDDGGGMDPEAMRRCMSFGFSDKKSQFAIGRYGNGFKTSSMRLGADVIVFSCHLNNRILTQSIGLLSYTYLTQTQLDRIVVPMVNYEFNTSTGSLEILNGNEHFVANLSLLLRWSPYSSEADLLKQFDDIGSHGTKVIIYNLWCNDDGNLELDFETDPSDIRIAGDIKKIDTLPAWKSINEEHIANRFRYSLHVYMSILYLKIPESFQIILRGQVVKPHNIADDLKYPQFVKYAPQIGGSVKGTALTVTTIGFLKDAPQVNVHGFNVYHKNRLILPFWQVVSYFDSRGRGVVGILQADFIEPTHNKQDFERTSLFQKLEVRLKEMTWEYWDTHCTLFGYKEKKKLPPGVTPVYPLLRKPLSVEKPVILNKSSSTVVNTKEVYGNSEQCSTNLRIRSEQGSNNKRKPHELVVDLQNMKRFARKDNVTHVGFSQNNKITATLDDQVVDQKTIDLMQQNKKLHAKCLEFEKTEEELNLKVTTLRSKIQAAQDEYNRLLAEVKSLEVKEDLWLTTRFWGKKGSQGLSPSFSVRHPVYHVYGILHHLRLSVLQRSWLQPSATSSTSISSSATPSSPSTIPLASTTPTVSNQSNPRFLVNYSILSVCQPSNTIDSDRRQPVQSRFPHGLLHPLLLANPPASSTSTPSSGSRSTTSFVL 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00451 836 MobiDBLite consensus disorder prediction 59 82 - -
Cca03g00451 836 MobiDBLite consensus disorder prediction 814 836 - -
Cca03g00451 836 Coils Coil 654 688 - -
Cca03g00451 836 MobiDBLite consensus disorder prediction 815 836 - -
Cca03g00451 836 Pfam Morc6 ribosomal protein S5 domain 2-like 374 514 IPR041006 -
Cca03g00451 836 PANTHER PROTEIN MICRORCHIDIA 6 5 690 - -
Cca03g00451 836 Gene3D - 122 325 IPR036890 -
Cca03g00451 836 MobiDBLite consensus disorder prediction 742 768 - -
Cca03g00451 836 MobiDBLite consensus disorder prediction 31 92 - -
Cca03g00451 836 MobiDBLite consensus disorder prediction 31 45 - -
Cca03g00451 836 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 145 347 IPR036890 -
Cca03g00451 836 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 5 690 IPR045261 GO:0016887
Cca03g00451 836 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 147 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00451 Cca-Chr3 7065777 7083876 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00451 - - gmx:100795667 1202.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00451 03 7065777 7083876 Cca11g01824 11 43247554 43256859 ECH
Cca03g00451 03 7065777 7083876 Cca03g00451 03 7065777 7083876 ECH