Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01823 ATGGGTTCCACTCGGATGTGTCATTTCTTTCTGCTATTGTTCATACTTAATACTGCTTTTATTGCAAATGTGTCTATGGCCAATAATGCAACAGAATCCTCGTGGCTTCTCAGAATTAAATCAGAATTGATTGATCCATTAGGAGCTCTTAGCAACTGGTCTCCAACAACTCATATCTGCAACTGGAATGGAATAACGTGTGCAGTTGATCAGGAACATATTATAGGCCTGAATCTGTCTGGTTCAGGAATAtcaggttccatttcagttgagttcagtcacttcacttctcttcaAATACTTGATTTGTCTTCAAATTCTCTTGCTGGCTCCATCCCTTCAGAGCTCGGCCAGCTTCAAAATCTAAGAATATTGCAACTATACTCAAATGATCTCTCTGGTAACATTCCTGCAGAGATAGGTAACTTGAAGAAGTTGCAAGTTCTTAGACTAGGAGACAACATGTTGACAGGTGAAATTCCACCTAGTATTGCCAATATGAGTGAATTGACAATGTTGGCTCTAGGCTATTGCAACTTAAATGGAAGCATACCCTTTGGGATTGGTAAATTGAAGCATCTAATATCTTTTGATTTACAGATGAACAGTTTTAGTGGACCCATACTTGAAGAGATTCAAGGCTGTGAAGAGCTCCAAAACTTCGCAGCATCCAACAACATGCTTGAAGGAGACATACCTTCCTCTGTGGGGTCTCTCAAATCTTTGAAGATTCTGAATCTGGCCAACAACAGTTTATCTGGATCAATTCCTACAGCTTTTAGTCACCTTTCTAACTTGACATACCtgaatttgcaaggaaacaaactacatggagaaattccttctgtgcttaacagtctgattcagctgcagaagctagacttgtccaaaaacaacctttctggatcaatacctatccttaatgcaaaattacatagtcttgAAACTCTGGTTCTGTCTGATAATGCTCTGACAGGTAGCATTCCAAGTAACTTCTGCCTCAGAGGTTCAAAGCTTCAGCAACTTTTCTTGGCTAGAAACATGCTCTCTGGCAAGTTTCCGTTGGAGTTACTCAACTGCTCCTCAATCCAACAGTTGGACCTTTCTGATAACAGCTTTGAAGGAGAACTTCCTTCCAGCCTGGACAAACTGCAGAACCTCACAGATCTTGTGCTCAACAACAACAGCTTCGTTGGTTCTCTACCTCCTGAAATTGGGAACATTAGTAGCTTGGAAGGCCTTTTCCTATTTGGTAACTTCTTCACAGGTAAAATTCCAATGGAGATTGGAAGGCTGCAGAGCTTGAGCACCATTTACCTCTATGACAACCAGATGTCAGGACTCATACCAAGAGAGTTAACAAACTGCACAAGCTTAACAGAAATCGACTTCTTCGGAAATCACTTTACAGGGCCCATTCCAGAGACCATAGGTAAGCTCAAGGACTTGGTTGTTCTTCATCTTAGGCAGAATGACTTGTCTGGCCCAATCCCACCAAGCATGGGGTACTGTAAAAGTCTTCAGATACTAGCCTTAGCAGATAACAGGTTGTCTGGTTCCATTCCACCCACATTCAGTTACCTTTCAGAACTCACCAAAATTACCCTTTACAACAATTCCTTTGAAGGACTTCTCCCTCATTCGCTCTTCTCTCTCAAAAGCCTCAAAATCATAAACTTTTCACGCAACAAGTTCAGTGGAAGTTTCTTCCCTCTCACTGGTTCAAATTCCCTGACCATTCTGGACTTGACCAACAACAGCTTCTCAGGTCCTATCCCTTCTACTCTAGCCAATTCTAGAAACCTCAGACGTCTTAGACTTGGACAAAATTATCTCACAGGAACCATTCCTTCTGAATTTGGCCACCTCACTGAGCTCAACTTTCTTGATTTATCATTCAACAACTTCACAGGAGATGTGACACCTCAACTCTCAAACTCCAAGAAAATGGAACACATCCTGATGAGTAACAACAAGTTCAGAGGCAAAATACCATCTTGGTTGGGAAGCTTACAAGAACTTGGCGAGCTAGATCTCTCATACAATAACTTCAGTGGAAGGTTACCTTCTGAGCTAGGTAACTGCTCAAACCTACTCAAGCTTTCTCTCCATCACAACAATCTCTCAGGTGAGATCCCACAAGAGATTGGAAAACTCACTTCCCTCAATGTCCTCAGTTTGCAAAGGAACAGCTTCTCTGGCCTCATTCCTCCAACAATTCAGCAATGCACAAAGCTCTATGAGCTGAGGCTCTCGGAGAACTTGCTAACAGGTGTAATACCAGTTGAGCTGGGAGGGCTAGCTGAGTTGCAAGTGATATTGGACTTGAGTAAAAACCTCTTCACTGGTGAGATTCCACCATCTTTAGGAAACCTCATGAAACTAGAAAGACTCAATCTTTCTTTCAACCAACTTGAAGGCAAAGTTCCTCCCTCACTTGGCAAACTCACAAGCCTGCACGTGCTGAATCTCTCAAACAACCATCTTGAGGGGGAGATTCCTTCAACATTTTCAGGATTCCCACTAAATTCATTCCTGAAAAACAAGGGCTTGTGTGGCCCACCATTAGGATCATGCTCAGAATCCACTTCACAGGGGAAAATGCAGCTATCAAACACACAAGTGGCAGCAATCATTGTGGCCATTGTGTTTACTTCCACTGTGATATGCTTAGTGATGTTGTATATCATGCTCAGAATCTGGTGCAACTGGAGAAAAGTGACCATTTCAAGTGCAGAAGGTGGCAATGTAGCTCACAAAACAAGGAATGGAGTGTATTGGAATATGAACTCCTTTGGGTTGATTCATTCACCAGATAAGCAGAATTCAGCAGCAACAACTTCCTTCTATAATCTCAAAATGGAAACCAAGGAAAATACAAATATGTAA 2889 0.3946 MGSTRMCHFFLLLFILNTAFIANVSMANNATESSWLLRIKSELIDPLGALSNWSPTTHICNWNGITCAVDQEHIIGLNLSGSGISGSISVEFSHFTSLQILDLSSNSLAGSIPSELGQLQNLRILQLYSNDLSGNIPAEIGNLKKLQVLRLGDNMLTGEIPPSIANMSELTMLALGYCNLNGSIPFGIGKLKHLISFDLQMNSFSGPILEEIQGCEELQNFAASNNMLEGDIPSSVGSLKSLKILNLANNSLSGSIPTAFSHLSNLTYLNLQGNKLHGEIPSVLNSLIQLQKLDLSKNNLSGSIPILNAKLHSLETLVLSDNALTGSIPSNFCLRGSKLQQLFLARNMLSGKFPLELLNCSSIQQLDLSDNSFEGELPSSLDKLQNLTDLVLNNNSFVGSLPPEIGNISSLEGLFLFGNFFTGKIPMEIGRLQSLSTIYLYDNQMSGLIPRELTNCTSLTEIDFFGNHFTGPIPETIGKLKDLVVLHLRQNDLSGPIPPSMGYCKSLQILALADNRLSGSIPPTFSYLSELTKITLYNNSFEGLLPHSLFSLKSLKIINFSRNKFSGSFFPLTGSNSLTILDLTNNSFSGPIPSTLANSRNLRRLRLGQNYLTGTIPSEFGHLTELNFLDLSFNNFTGDVTPQLSNSKKMEHILMSNNKFRGKIPSWLGSLQELGELDLSYNNFSGRLPSELGNCSNLLKLSLHHNNLSGEIPQEIGKLTSLNVLSLQRNSFSGLIPPTIQQCTKLYELRLSENLLTGVIPVELGGLAELQVILDLSKNLFTGEIPPSLGNLMKLERLNLSFNQLEGKVPPSLGKLTSLHVLNLSNNHLEGEIPSTFSGFPLNSFLKNKGLCGPPLGSCSESTSQGKMQLSNTQVAAIIVAIVFTSTVICLVMLYIMLRIWCNWRKVTISSAEGGNVAHKTRNGVYWNMNSFGLIHSPDKQNSAATTSFYNLKMETKENTNM 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01823 962 ProSiteProfiles Leucine-rich repeat profile. 289 311 IPR001611 GO:0005515
Cca11g01823 962 PANTHER - 634 955 - -
Cca11g01823 962 PANTHER - 446 640 - -
Cca11g01823 962 PANTHER - 3 450 - -
Cca11g01823 962 Gene3D Ribonuclease Inhibitor 475 572 IPR032675 -
Cca11g01823 962 Gene3D Ribonuclease Inhibitor 282 376 IPR032675 -
Cca11g01823 962 Pfam Leucine rich repeat N-terminal domain 32 67 IPR013210 -
Cca11g01823 962 Gene3D Ribonuclease Inhibitor 573 639 IPR032675 -
Cca11g01823 962 Gene3D Ribonuclease Inhibitor 640 736 IPR032675 -
Cca11g01823 962 Gene3D Ribonuclease Inhibitor 737 861 IPR032675 -
Cca11g01823 962 Gene3D Ribonuclease Inhibitor 377 474 IPR032675 -
Cca11g01823 962 PRINTS Leucine-rich repeat signature 290 303 - -
Cca11g01823 962 PRINTS Leucine-rich repeat signature 816 829 - -
Cca11g01823 962 SUPERFAMILY RNI-like 77 398 - -
Cca11g01823 962 SUPERFAMILY L domain-like 336 638 - -
Cca11g01823 962 Gene3D Ribonuclease Inhibitor 186 281 IPR032675 -
Cca11g01823 962 Gene3D Ribonuclease Inhibitor 29 185 IPR032675 -
Cca11g01823 962 SUPERFAMILY RNI-like 575 841 - -
Cca11g01823 962 SMART LRR_typ_2 792 815 IPR003591 -
Cca11g01823 962 SMART LRR_typ_2 528 551 IPR003591 -
Cca11g01823 962 SMART LRR_typ_2 143 167 IPR003591 -
Cca11g01823 962 SMART LRR_typ_2 311 335 IPR003591 -
Cca11g01823 962 SMART LRR_typ_2 432 455 IPR003591 -
Cca11g01823 962 SMART LRR_typ_2 95 119 IPR003591 -
Cca11g01823 962 SMART LRR_typ_2 384 408 IPR003591 -
Cca11g01823 962 SMART LRR_typ_2 816 839 IPR003591 -
Cca11g01823 962 SMART LRR_typ_2 719 742 IPR003591 -
Cca11g01823 962 SMART LRR_typ_2 480 504 IPR003591 -
Cca11g01823 962 SMART LRR_typ_2 671 695 IPR003591 -
Cca11g01823 962 SMART LRR_typ_2 239 262 IPR003591 -
Cca11g01823 962 SMART LRR_typ_2 623 647 IPR003591 -
Cca11g01823 962 SMART LRR_typ_2 263 287 IPR003591 -
Cca11g01823 962 Pfam Leucine rich repeat 506 565 IPR001611 GO:0005515
Cca11g01823 962 Pfam Leucine rich repeat 577 636 IPR001611 GO:0005515
Cca11g01823 962 Pfam Leucine rich repeat 721 780 IPR001611 GO:0005515
Cca11g01823 962 Pfam Leucine rich repeat 224 276 IPR001611 GO:0005515
Cca11g01823 962 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 3 450 - -
Cca11g01823 962 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 446 640 - -
Cca11g01823 962 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 634 955 - -
Cca11g01823 962 Pfam Leucine Rich Repeat 794 816 IPR001611 GO:0005515
Cca11g01823 962 Pfam Leucine Rich Repeat 818 840 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01823 Cca-Chr11 43242793 43246087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01823 180 860 Receptor kinase-like Gene Family AT5G46330 35.854 4.19e-115 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01823 - - gmx:100818792 1662.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01823 11 43242793 43246087 Cca03g00449 03 7021450 7024929 PCT