Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00449 ATGAAGCTCATATTGATCAAGCACTCTGCTATGGCTTCCATTTGTATGTGCCATTTCATTTTAAAACTGACCATAGTGTGCACTGTTGTTGTTGCAACTCTAGGAGACAACACAACAGATTCCTACTGGCTTCTAAGAATAAAATCAGAGCTGATTGATCCATTAGGAGCCCTTAAGAACTGGTCTCCAACAATTCATATTTGTAACTGGAATGGACTCACATGTGAAGTTGATCGGACACATGTTGTAGGCCTTAATTTATCTGGCTCAGGAATTTCAGGTTACATTTCAGGTGAGTTCAGCCACCTCGTTTCTCTTCAAGCACTTGATTTGTCTTCAAATTTCCTCAAAGGCTCCATCCCTTCTGAACTTGGGCAGCTTCAAAATCTAAGAATACTGATGCTGTACTCAAATTATCTCTCTGGTAACATTCCTTCAGAGATAGGTAATTTGAGCAAGTTGCAAGTTCTTAGACTAGGAGATAACATGTTGGCTGGTGAAATCACACCTAGTATTGGCAACTTGAGTGAGTTGACAGTGTTAGGTGTAGCCAACTGCAACTTAAGTGGAAGCATACCTGCTGAGGTTGGTAACTTGAAGCATCTAGTATCTCTTGATTTACAAGTGAACAGTCTCAGTGGCTTCATACCTGAAGAGATTCAAGGCTGTGAAGAGCTCCAAAATTTTGCAGCATCAAACAACATGCTTGAAGGAGAAATACCCTCTTCTACAGGGTCTCTCAAATCATTGAGAATTCTGAACCTGGCCAATAACACTTTATCTGGACCAATTCCTACCTCTTTGAGCCTTCTCTCCAATTTGACATACCtgaatttgcttggaaacaagttaaatggtgaaattccttcagagcttaacaatttgagccagctacagaagcttgacttatccagaaacaacctttctagATCACTAACACTCCTTAATGTCAAACTACAAAATCTTGAAACCATGGTTCTGTCTGATAATGCTTTAACAGGTAGTATTCCATCTAACTTCTGCCTCACAGGTTCTAGACTTCAGCAACTGTTCTTGACTAGGAATAAGCTTTCTGGAAAGTTTCCCTTGGAGCTACTCAACTGCTCCTCAATCCAACAGGTGGACCTTTCTGGTAACAGTTTTGAAGGTGAACTTCCATCCAGCCTTGACAAACTTCAGAACCTCACAGATCTTGTGCTCAACAACAACAGCTTCACTGGATCTCTACCTCCTGAAATTGGAAATATTAGTAGCTTGAAAAGCCTTTTCTTGTTTGGTAACTTTTTCACTGGAAAAATCCCTGTGGAGATTGGAAGGCTGAAGAGGTTGAACACCATTTACCTCTATGATAACCAGATGTCTGGACCAATACCAAGAGAGTTAACAAACTGCACAAGCTTAACAGGCATTGACTTCTTTGGAAACCATTTTTCTGGCCCCATTCCAGAGACTATAGGTAGGTTAAAAGACTTAACTATTCTCCATTTAAGACAAAATGACCTTTCAGGTCCAATCCCACCAAGCATGGGATACTGTAAAAGGCTTCAGTTATTGGCATTGGCAGATAACAAGTTATCAGGTTCCATACCACCAACATTCAGTTACCTTTCACAAATTAGAACCATTACCCTTTACAACAACTCCTTTGAAGGACCTCTACCTGATTCACTCTCTCTTCTCAGAAACCTTAAAATCATAAACTTTTCCAATAACAAGTTCAGTGGCAATATCTTCCCTCTGACTGGTTCAAATTCTCTTACTGTTTTGGACTTGACAAACAACAGCTTCTCAGGCTCCATCCCTTCTATTCTTGCTAACTCCAGAGATCTCAACCGTCTCAGACTTGGAAACAATTATCTCACCGGAACCATTCCTTCTGAACTCGGTCAACTAACCAAGCTAAACTTCCTTGATTTATCATTCAACAACTTGACGGGACATGTGCCTCCTCAACTCTCAAAGTGCAAGAAAATTGAACACCTTCTGCTGAATAACAACAGATTGAGTGGCGAAATGTCGCCGTGGCTGGGAAGCTTACAAGAACTCGGTGAGCTAGATCTCTCATTCAACAACTTTCATGGAAGGGGTTCCTGCTGA 2097 0.3906 MKLILIKHSAMASICMCHFILKLTIVCTVVVATLGDNTTDSYWLLRIKSELIDPLGALKNWSPTIHICNWNGLTCEVDRTHVVGLNLSGSGISGYISGEFSHLVSLQALDLSSNFLKGSIPSELGQLQNLRILMLYSNYLSGNIPSEIGNLSKLQVLRLGDNMLAGEITPSIGNLSELTVLGVANCNLSGSIPAEVGNLKHLVSLDLQVNSLSGFIPEEIQGCEELQNFAASNNMLEGEIPSSTGSLKSLRILNLANNTLSGPIPTSLSLLSNLTYLNLLGNKLNGEIPSELNNLSQLQKLDLSRNNLSRSLTLLNVKLQNLETMVLSDNALTGSIPSNFCLTGSRLQQLFLTRNKLSGKFPLELLNCSSIQQVDLSGNSFEGELPSSLDKLQNLTDLVLNNNSFTGSLPPEIGNISSLKSLFLFGNFFTGKIPVEIGRLKRLNTIYLYDNQMSGPIPRELTNCTSLTGIDFFGNHFSGPIPETIGRLKDLTILHLRQNDLSGPIPPSMGYCKRLQLLALADNKLSGSIPPTFSYLSQIRTITLYNNSFEGPLPDSLSLLRNLKIINFSNNKFSGNIFPLTGSNSLTVLDLTNNSFSGSIPSILANSRDLNRLRLGNNYLTGTIPSELGQLTKLNFLDLSFNNLTGHVPPQLSKCKKIEHLLLNNNRLSGEMSPWLGSLQELGELDLSFNNFHGRGSC 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00449 698 Gene3D Ribonuclease Inhibitor 37 195 IPR032675 -
Cca03g00449 698 Gene3D Ribonuclease Inhibitor 582 696 IPR032675 -
Cca03g00449 698 Gene3D Ribonuclease Inhibitor 315 509 IPR032675 -
Cca03g00449 698 SUPERFAMILY L domain-like 39 310 - -
Cca03g00449 698 Pfam Leucine rich repeat N-terminal domain 40 75 IPR013210 -
Cca03g00449 698 PRINTS Leucine-rich repeat signature 295 308 - -
Cca03g00449 698 PRINTS Leucine-rich repeat signature 106 119 - -
Cca03g00449 698 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 166 344 - -
Cca03g00449 698 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 264 577 - -
Cca03g00449 698 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 410 694 - -
Cca03g00449 698 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 82 283 - -
Cca03g00449 698 SUPERFAMILY L domain-like 344 694 - -
Cca03g00449 698 SMART LRR_typ_2 319 342 IPR003591 -
Cca03g00449 698 SMART LRR_typ_2 103 127 IPR003591 -
Cca03g00449 698 SMART LRR_typ_2 151 175 IPR003591 -
Cca03g00449 698 SMART LRR_typ_2 247 271 IPR003591 -
Cca03g00449 698 SMART LRR_typ_2 631 655 IPR003591 -
Cca03g00449 698 SMART LRR_typ_2 295 318 IPR003591 -
Cca03g00449 698 SMART LRR_typ_2 199 222 IPR003591 -
Cca03g00449 698 SMART LRR_typ_2 488 512 IPR003591 -
Cca03g00449 698 SMART LRR_typ_2 392 416 IPR003591 -
Cca03g00449 698 Gene3D Ribonuclease Inhibitor 196 314 IPR032675 -
Cca03g00449 698 Gene3D Ribonuclease Inhibitor 511 581 IPR032675 -
Cca03g00449 698 Coils Coil 305 325 - -
Cca03g00449 698 Pfam Leucine rich repeat 585 644 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00449 Cca-Chr3 7021450 7024929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00449 53 695 Receptor kinase-like Gene Family AT5G46330 37.809 1.67e-113 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00449 - - gmx:100802757 1200.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00449 03 7021450 7024929 Cca03g00449 03 7021450 7024929 ECH
Cca11g01823 11 43242793 43246087 Cca03g00449 03 7021450 7024929 PCT