Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01816 ATGGACATGAAGGGATATTCAGTTTCCTGGACAAAACATAAGAAAGAGCCATATTTTGCAGCTCATCACAGAAGAAGACAACACCAATGCATACAAGCACATCATGATGCCACAGAAGAAACAACTTCACCAAATCATTCCTTCAAATTGGCTCTTTCCACTTCCCAAAATACTCTACTACCTATGCTACCTGCCCTTGTTGCTTTCCTCCTACTCCTTACTTCAATTGGCACAGCATTCTCTCACCCCATTGCTTCCAATTCACCTTTGCCAGTACTCTCTCACCACAATGCTAACCACACTTTGAGACCAGCTGCAGTGTTGCAAAAGTTCAGGAGAATCAGAGCTCACCTCAAGAAGATCAACAAGCCTGCTGTTAAAACAATCAAGAGTCCAGATGGAGATTTGATAGATTGTGTTTTATCTCATCAGCAACCTGCTTTTGACCATCCTAACCTCAAAGGGCAAAGACCATTGGATCCACCAGAAAGGCCAAAGGGTCACCACACCAATGGAGAAACTGCCATAGAGAGCTTTCAGCTTTGGACTGATTCTGGTGAAGTGTGCCCAGAAGGAACTGTTCCAATCAGAAGAACAACTGAACAGGATTTTCTACGAGCAAGCTCTATCAGAAGATTTGGAAGAAAACCAAGACGTGGTGTACGGAGGGACTCAACTGGCACTGGTCATGAGCATGCAGTTGTTTCTGTAAATGGTGATCAATATTATGGAGCAAAAGCAAGCATAAACGTGTGGACACCTAGCGTAACCGATCCATATGAGTTCAGTTTATCACAGATATGGGTTATTGCTGGATCGTTTGGTAATGATCTCAATACCATAGAAGCTGGATGGCAGGTGAGCCCTGAGCTATATGGAGACAACTATCCTAGGTTCTTCACTTATTGGACAACGGATGCATATCAAGCAACAGGATGCTACAACTTACTATGTTCAGGATTTGTCCAAACTAACAACAGGATAGCAATAGGGGCAGCAATCTCCCCAAGATCCATCTATAATGGCAGACAATTTGATATTGGCTTAATGGTTTGGAAGGACCCAAAGCATGGACATTGGTGGCTGGAGTTTGGTTCGGGGCTACTAGTTGGGTACTGGCCAGCATACTTGTTTAGTCACTTGAGAAGCCATGCTAGCATGGTACAATTTGGAGGGGAAATTGTGAATTCTCGTTCAAGGGGCTATCACACTGGCACTCAAATGGGAAGTGGCCATTTTGCAGAAGAAGGGTTTAGAAAAGCAGCTTATTTTAGAAACTTACAAGTTGTTGATTGGGACAATAATTTGCTTCCTCTGTCAAATATTCACCAGGTGGCTGACCATTCCAATTGCTATGACATAAGGGTGGGATCAAACAATGTTTGGGGAACTTACTTTTACTATGGAGGTCCTGGAAGGAATGTGAGATGTCCTTGA 1437 0.4335 MDMKGYSVSWTKHKKEPYFAAHHRRRQHQCIQAHHDATEETTSPNHSFKLALSTSQNTLLPMLPALVAFLLLLTSIGTAFSHPIASNSPLPVLSHHNANHTLRPAAVLQKFRRIRAHLKKINKPAVKTIKSPDGDLIDCVLSHQQPAFDHPNLKGQRPLDPPERPKGHHTNGETAIESFQLWTDSGEVCPEGTVPIRRTTEQDFLRASSIRRFGRKPRRGVRRDSTGTGHEHAVVSVNGDQYYGAKASINVWTPSVTDPYEFSLSQIWVIAGSFGNDLNTIEAGWQVSPELYGDNYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNRIAIGAAISPRSIYNGRQFDIGLMVWKDPKHGHWWLEFGSGLLVGYWPAYLFSHLRSHASMVQFGGEIVNSRSRGYHTGTQMGSGHFAEEGFRKAAYFRNLQVVDWDNNLLPLSNIHQVADHSNCYDIRVGSNNVWGTYFYYGGPGRNVRCP 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01816 478 Pfam Neprosin activation peptide 128 235 IPR025521 -
Cca11g01816 478 Pfam Neprosin 261 471 IPR004314 -
Cca11g01816 478 MobiDBLite consensus disorder prediction 147 171 - -
Cca11g01816 478 MobiDBLite consensus disorder prediction 156 171 - -
Cca11g01816 478 PANTHER CARBOXYL-TERMINAL PEPTIDASE 47 478 - -
Cca11g01816 478 Gene3D - 255 365 - -
Cca11g01816 478 PANTHER PROTEIN, PUTATIVE (DUF239)-RELATED-RELATED 47 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01816 Cca-Chr11 43154470 43158095 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01816 - - gmx:100820129 871.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00443 03 6947830 6952485 Cca11g01816 11 43154470 43158095 ECH
Cca11g01816 11 43154470 43158095 Cca11g01816 11 43154470 43158095 ECH
Cca11g01816 11 43154470 43158095 Cca03g00443 03 6947830 6952485 PCT