Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00443 ATGGGCATGAGAAGACACTCAAAACACACCAATGATCCATTTTTTGCATCTCACCACAGAACAAGACAACACCAATGCAAACAACCAAACAATCATGTTGCCACATGTGCACAACAGAACCATTCTCCAAAATTGGCTTCTTTCACTTCCCAAAATGCTCCACCTGTGCTACTGCTACCTGCTTTTGTTGCCTTGCTGCTCCTTCTTTCTTCAATTACCCCAGCAGCATTGTGCCACACCCTTCAGGGTAACAACACTTTTAGGCCAGTCCACGAGTTGCTCAAGTTGAAGAGAGTTAGAGCTCACTTGAAGAAGATCAACAAGCCTGCTGTCAAGACAATTCAGAGTCCAGATGGTGATTTGATAGATTGTGTTTTATCTCATCAACAGCCAGCTTTTGACCATCCTGACCTTAGAGGGCAGAAACCATTGGATCCACCAGAGAGGCCAAAGGGAAACCACACAATTGGTGAAACCAAAAGGGTAAGTGAGAGCTTTCAGCTCTGGAGTGATTCTGGTGAAGAATGCCCCGAGGGAACTGTTCCAATCAGAAGAACAACAGAGGAGGATATTCTCAGAGCAAGTTCTATCCGAAGATTTGGAAGAAAACCAAGACATGTACGGAGAGACTCATCTGGCAGTGGCCATGAGCATGCAGTTGTTTTTGTGAATGGAGATCAATATTATGGAGCAAAAGCAGGCATAAACGTGTGGGCACCTAGTGTAACAGATGAGTTTGAATTCAGCTTGTCACAGATATGGGTTATTGCTGGCTCCTTTGGTAAAGATCTCAACACCATAGAAGCTGGTTGGCAGGTCAGTCCACAACTTTATGGAGACAATTATCCAAGGTTCTTCACTTATTGGACTACTGATGCATATCAAACAACTGGGTGCTACAACTTACTCTGTTCAGGATTTATCCAAACTAACAATAGGATAGCAATAGGTGCAGCAATCTCCCCAAGATCCACTTACAACAGAAGACAGTTTGATATTGGCTTAATGGTTTGGAAGGATCCAAAGCATGGACACTGGTGGCTGGAATTTGGGTCAGGTCTACTGGTAGGGTACTGGCCAGCAAACATGTTCAGCCACTTGAGGAGCCATGCAAGTATGGTGCAATTTGGAGGAGAAATTGTGAACAGTCGTTCAAGGGGTTACCACACTGGCACCCAAATGGGGAGTGGCCATTTTGCTGAAGAAGGGTTCAGAAAAGCAGCATATTTTAGAAACTTGCAAGTGGTTGATTGGGACAATAACTTGATCCCTCTTAGAAACATTCACCACTTGGCTGACCATTCCAATTGCTATAACATAAGGCAGGGCACCAACACTGTTTGGGGAACTTACTTTTACTATGGAGGGCCTGGAAGGAATGTTAAATGCCCTTGA 1395 0.4437 MGMRRHSKHTNDPFFASHHRTRQHQCKQPNNHVATCAQQNHSPKLASFTSQNAPPVLLLPAFVALLLLLSSITPAALCHTLQGNNTFRPVHELLKLKRVRAHLKKINKPAVKTIQSPDGDLIDCVLSHQQPAFDHPDLRGQKPLDPPERPKGNHTIGETKRVSESFQLWSDSGEECPEGTVPIRRTTEEDILRASSIRRFGRKPRHVRRDSSGSGHEHAVVFVNGDQYYGAKAGINVWAPSVTDEFEFSLSQIWVIAGSFGKDLNTIEAGWQVSPQLYGDNYPRFFTYWTTDAYQTTGCYNLLCSGFIQTNNRIAIGAAISPRSTYNRRQFDIGLMVWKDPKHGHWWLEFGSGLLVGYWPANMFSHLRSHASMVQFGGEIVNSRSRGYHTGTQMGSGHFAEEGFRKAAYFRNLQVVDWDNNLIPLRNIHHLADHSNCYNIRQGTNTVWGTYFYYGGPGRNVKCP 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00443 464 Pfam Neprosin activation peptide 113 221 IPR025521 -
Cca03g00443 464 MobiDBLite consensus disorder prediction 1 19 - -
Cca03g00443 464 Gene3D - 240 350 - -
Cca03g00443 464 MobiDBLite consensus disorder prediction 132 160 - -
Cca03g00443 464 PANTHER PROTEIN, PUTATIVE (DUF239)-RELATED-RELATED 38 464 - -
Cca03g00443 464 MobiDBLite consensus disorder prediction 1 27 - -
Cca03g00443 464 MobiDBLite consensus disorder prediction 138 158 - -
Cca03g00443 464 PANTHER CARBOXYL-TERMINAL PEPTIDASE 38 464 - -
Cca03g00443 464 Pfam Neprosin 247 457 IPR004314 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00443 Cca-Chr3 6947830 6952485 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00443 - - gmx:100777828 821.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00443 03 6947830 6952485 Cca11g01816 11 43154470 43158095 ECH
Cca03g00443 03 6947830 6952485 Cca03g00443 03 6947830 6952485 ECH
Cca11g01816 11 43154470 43158095 Cca03g00443 03 6947830 6952485 PCT