Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01811 ATGGCAAAGCTTGCAGTTCCATCTATGTTTTCCATGAGGCACTTTCTGGTGCTCTCGCTGGCTCTCAATGTGAGCTTGATCCTGAGAACCACGTATTATGAGAGTGAAGAAGGAAGCAAGAGGTTTTGCTTGAAGAAGAAAATGATGGCAGATGCGGATTCTGAAAGAGAGGGACATTTTATCCACAAAGCACGTTTGGCTATATCCACTACTTTCTCTCTCGTTAATTCTACTCGTTCTGGAGGAAAGGAAAGGGTCATCAACTTGGACCATGGAGATCCAACAATGTATGAAAGATTTTGGCGGTTAAGGGGTGACAAGACCACGATCATAATTCCAGGATGGCAATCCATGAGCTATTTATCTGATACATCAAACATTTGCTGGTTTCTGGAGGCTGAGTTTGCAAAGGAAGTAGTGAGGTTGCACAAAGTGGTGGGAAATGCTGTGACAGAAGGTCGCCATATTGTTGTTGGGACAGGTTCCTCTCAGTTAATTCTGGCTGCACTTTATGCTCTGTCTTCGCCTGATGCTCATGAACCAATCAGTGTGGTATCTGCCGCACCCTATTATTCGTCCTACCCATCAATGGCAGATTACCAGAAATCAGGCCTTTACAAATGGGCTGGTGATGCAGAGAGTTTTGACAAAGAGGGTCCTTATATTGAGCTGGTTACTTCTCCCAATAATCCTGATGGATTTAGAAGGCGATCAATGGTCAACCGAAGCCAAGGACTATTGATTCATGACCTTGCCTATTATTGGCCTCAATACACTCCAATATCATCCCCTTCAGATCATGATCTCACGCTTTTCACTGTCTCAAAAAGCACTGGTCATGCAGGAATGCGCATAGGGTGGGCTCTTGTCAAAGATAAAGAAGTTGCAAAGAAAATGACTAAATTCATAGAGCTAAATACAATTGGTGTCTCTAAGGATTCTCAACTCAGAGCTGCCAAGGTTTTAAAGGCAGTGTCTGACAGCTGCGAACAAGAAAACTCCAAAAATGAGGAATCATTTTTCAAGTACAGCTACAAGCTCATGGCGCAAAGGTGGAAGCAACTGAGAGAAGTAGTTGAAGCCGGTGAGTTGTTCACTTTGCCCCAATTTTCTCCTGCATTCTGCACCTTCTTTGGCCAGGAGATGGATCCTCAACCAGCTTTCATGTGGTTGAAGTGTGAGGGAGATATAGAGGACTGCGAAAGCTTCCTTCGAGGACACAAAGTTTTAACAAGAAGTGGGAAACACTTCGGGGCTAGCCCAAAATACGTAAGAATTAGCATGCTGGATACAGATGAAACTTTTATACAATTAATAGATAGACTATTAGCCATACAAGAGCGAGAATGA 1350 0.4348 MAKLAVPSMFSMRHFLVLSLALNVSLILRTTYYESEEGSKRFCLKKKMMADADSEREGHFIHKARLAISTTFSLVNSTRSGGKERVINLDHGDPTMYERFWRLRGDKTTIIIPGWQSMSYLSDTSNICWFLEAEFAKEVVRLHKVVGNAVTEGRHIVVGTGSSQLILAALYALSSPDAHEPISVVSAAPYYSSYPSMADYQKSGLYKWAGDAESFDKEGPYIELVTSPNNPDGFRRRSMVNRSQGLLIHDLAYYWPQYTPISSPSDHDLTLFTVSKSTGHAGMRIGWALVKDKEVAKKMTKFIELNTIGVSKDSQLRAAKVLKAVSDSCEQENSKNEESFFKYSYKLMAQRWKQLREVVEAGELFTLPQFSPAFCTFFGQEMDPQPAFMWLKCEGDIEDCESFLRGHKVLTRSGKHFGASPKYVRISMLDTDETFIQLIDRLLAIQERE 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01811 449 PANTHER TRYPTOPHAN AMINOTRANSFERASE-LIKE PROTEIN 1 447 - -
Cca11g01811 449 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 1 447 - -
Cca11g01811 449 CDD AAT_like 134 442 - -
Cca11g01811 449 SUPERFAMILY PLP-dependent transferases 84 444 IPR015424 -
Cca11g01811 449 Pfam Allinase 87 444 IPR006948 GO:0016846
Cca11g01811 449 Gene3D Aspartate Aminotransferase, domain 1 337 446 IPR015422 GO:0003824
Cca11g01811 449 Gene3D - 131 335 IPR015421 GO:0003824
Cca11g01811 449 Gene3D - 73 127 IPR037029 GO:0016846
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01811 Cca-Chr11 43035519 43044579 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01811 K16903 - gmx:100777098 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01811 11 43035519 43044579 Cca11g01811 11 43035519 43044579 ECH
Cca11g01811 11 43035519 43044579 Cca03g00433 03 6803076 6817146 PCT