Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00433 ATGGCTAAGCTTCCTATTCCCACTCTCTTCTCTTTGAGGCACTTCTTCATCCTCTCCCTCGCCTTCAACGTCACCCTCATACTCAGATTAATGCTCTACCACCAAACACAACCCTTTGcaacaacaacaacaacaacTAATTTTGACACACCGATTCtcatatcatcatcatcatcatcaGACACCAATAGAGTCATCAACCTCGACCATGGAGACCCGAGAGTATATGAGAGATTTTGGAGACAAACGGGTGACAAGAGCACGATCATAATCCCAGGGTGGCAGTCAATGAGTTATTTTTCTGATGTGAGCAACATTTGCTGGTTTTTGGAGGCAGAGTTTGCGAGGGAAGTGGTGAGGTTGCACAAAGTGGTTGGCAATGCAGTCACAGAAGGGCGTCACATTGTTGTTGGAACAGGTTCTTCTCAGCTCTTTCTGGCTGCTCTTTATGCGCTCTCCCCCAATGATGCACCTGAACCAATCAGTGTAGTATGTGCCTCACCCTACTACTCGTCCTACCCATCAATGACGGATCACCTGAAATCAGGCCTTTACAAGTGGGGTGGTGATGCAGAAAGTTTTGACAAAGAGGGTCCCTACATTGAGCTGGTTACTTCTCCCAATAACCCTGATGGACATGTAAGAAGATCTAAGGTCAACAGAAGCCAGGGATTTTTGGTCCATGACCTTGCCTATTACTGGCCACAGTACACTCCAATATCTGCTCCTGCAGACCATGATCTCACACTTTTCACTGTCTCAAAAAGCCCTGGTCATGCGGGAATGCGCATAGGGTGGGCTCTTGTGAAAAACGAAGAGGTAGCAAAGAAAATGACTAAATTCATAGAGCTGAATACAATTGGGGTGTCTAAGGACTCACAACTCAGGGCTGCTAAGGTTTTAAGGGCAGTTTCTGATAGCTGGGAACAAGGAAATTCCAACGAGGGTGAGTCATTCTTCAAGTTCAGTCACAAACTCATGGCCAAAAGGTGGAAGCAACTGAGACTAGTGGTGGAGCGTGGTGGATTGTTTAGTTTGCCCAAATTTTCTCCAGCATTCTGCACCTTCTTCAATCAGGTCTTGGAGCCTCAACCAGCTTTTGTGTGGTTAAAGTGTGAGGGAAACGTGGAAGACTGCGAAAGCTTCCTTAGAGGACACAACATCTTAACGAGAAGTGGGATTCACTTTGGGGTTAGCCCAAAATACGTAAGAATCAGTATGTTGGACACTGATGAAAACTTTAACCACTTTCTAGATAGACTCTCTGGCATACAGTCATGA 1281 0.445 MAKLPIPTLFSLRHFFILSLAFNVTLILRLMLYHQTQPFATTTTTTNFDTPILISSSSSSDTNRVINLDHGDPRVYERFWRQTGDKSTIIIPGWQSMSYFSDVSNICWFLEAEFAREVVRLHKVVGNAVTEGRHIVVGTGSSQLFLAALYALSPNDAPEPISVVCASPYYSSYPSMTDHLKSGLYKWGGDAESFDKEGPYIELVTSPNNPDGHVRRSKVNRSQGFLVHDLAYYWPQYTPISAPADHDLTLFTVSKSPGHAGMRIGWALVKNEEVAKKMTKFIELNTIGVSKDSQLRAAKVLRAVSDSWEQGNSNEGESFFKFSHKLMAKRWKQLRLVVERGGLFSLPKFSPAFCTFFNQVLEPQPAFVWLKCEGNVEDCESFLRGHNILTRSGIHFGVSPKYVRISMLDTDENFNHFLDRLSGIQS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00433 426 Gene3D - 110 309 IPR015421 GO:0003824
Cca03g00433 426 Gene3D - 47 106 IPR037029 GO:0016846
Cca03g00433 426 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 1 425 - -
Cca03g00433 426 SUPERFAMILY PLP-dependent transferases 59 422 IPR015424 -
Cca03g00433 426 Pfam Allinase 66 423 IPR006948 GO:0016846
Cca03g00433 426 CDD AAT_like 113 421 - -
Cca03g00433 426 Gene3D Aspartate Aminotransferase, domain 1 310 426 IPR015422 GO:0003824
Cca03g00433 426 PANTHER TRYPTOPHAN AMINOTRANSFERASE-LIKE PROTEIN 1 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00433 Cca-Chr3 6803076 6817146 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00433 K16903 - gmx:100820582 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00433 03 6803076 6817146 Cca03g00433 03 6803076 6817146 ECH
Cca11g01811 11 43035519 43044579 Cca03g00433 03 6803076 6817146 PCT