Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01803 ATGATGGGTAAACCTAACCCTAACCCGGAAGAGGAAAAGAGCCTCCGGGAGGAGCTGTTGGGTCCCATCTTGCTGGGAGAGCGCATCATAAAACTGGCTCAGGAGGCAGAGTCGTCCAAGGTGGACTGCGCGGAGCTGGCGCGGAAGGTGCAGGTGGTGTGCGACAACCTGCGGTCGGTGGTGCGCGTGGTGTCGGGGAGCCAGTGCGGCGTGAACGAGCGTCCCATCCGGCGCATAGTGGGCGAGGTATCGAAAAACCTAGAGCGCACGGTGGCGCTGGTCCGCAAGTGCAAGAAGCACGGCGGCGTCCTCCGGCAGGTGTTCTCGATGACGAGCACGGGCGACTTCCGGAAGGTGTGGAACCTTCTGGAATCTTCGAGCGGCGACATGGAGTGGCTCCTGAGCATCTTCGAGTCGAAGGGCTCCAACGTGTCCCTCCCCCCCATCGCCAGCAACGACCCCATCCTGGCTTGGGTCTGGACCTTCATCTACACTCTCCAATTGGGCCAGCCCAAGGACCGCGCCGAAGCCGCCACGGAGCTTGGTTCCCTGGCCCGAGACAACGACCGTACCAAGTTCATCATTTTGGAAGAAGGTGGGGTTCTTCCCCTCCTCAAGCTTCTCAAGGAAGGCTCTTCCCCCGACGCTCAAGTCGCTGCTTCCAATGCTCTCGTCAACATCACCACCAACCAAGACAGGGTCGTTGCTTTCCTTGTCGACTCCCATGCTGTCCCCACCCTTGTTCAGGTCCTTGGTGACTCCCCCATGAGGGTTCGTGTCTCTGTTGCCAATTTAGTCTCTGCCATGGCTGAGCAATGTGTTGTCGCTCGCGAGGAGTTCGTCAGGGCCAATGTCACTAGACCCCTTGTGTCATTGTTGTCCATGGACACCGTCCTCGCCGACCCCATGGCCGGCCGCGCTAGCCTTCATTCGCTTGTTCTCAATTTGTCCAATGCCGGTGACGCCACCTCCGATGGGAGTAGCCGAGGCTCCAGCCACCATAGGAGGGACAGAGAAAGGGAGGTTGAGAGCCCCGAGTTGAGGTATCATGTCAAGGTCTGTTGTGCTAAGGCTCTTTGGAAACTCTCCAAAGGGTGTCTTCTAACTTTCAAGAAGATTACCGAGACCAAAGGCTTGCTTTGTCTCGCCAAGATCATTGAGTCTGAGACTGGGGAATTGCAGCTCAATTGTCTCATGGCTGTCATGGAGATCGCTGCGGTGGCCGAGTCCAATGCTGATCTTAGAAGAGCTGCTTTTAAGCGAACTGCGCCCGCCCCCAAGGCGGTTTTGGATCAGCTTTTGAGGGTGGTTAAGGAAGAGACCAATCCAGCATTGCAGATTCCTGCCATTAAGGCAATTGGTTCCTTGGCTAGAAATTTCTCGGGAAAGGATCCGCAAGTTCTTGCTCCTTTGGTTGCTCAGCTTGGTAATAGAGATGTTGATGTAGCCAGTGAGGCTGCCATTGCCTTGGGGAAGTTTGTGTGCCAGGAGAATTATAACTATGGTGACCATTCTAAGGCAATAGTTGAGGAGCTTGATGGAATTCCTAAGCTAATGAGCCTGCTGCAGATAAATCATCGGCAACAAGTGCATGGCCTGAAATTACTTTGTTTCCTTGCCATAAATGTAGGCAACAGTAAGGTCCTTGAGCAAGAACGTGTCTTGGGTACCCTAGAGAGGCTTGCTCGTCCTGTTCAATCTCAACATCCTGAATTGAAGGATCTCTTCGCAAAGGCCATACACCACCTCACTCTTTATCAGCCAGGAGCTCAATTGCACAGACAGCCCTTGGGGCTGTAA 1800 0.5472 MMGKPNPNPEEEKSLREELLGPILLGERIIKLAQEAESSKVDCAELARKVQVVCDNLRSVVRVVSGSQCGVNERPIRRIVGEVSKNLERTVALVRKCKKHGGVLRQVFSMTSTGDFRKVWNLLESSSGDMEWLLSIFESKGSNVSLPPIASNDPILAWVWTFIYTLQLGQPKDRAEAATELGSLARDNDRTKFIILEEGGVLPLLKLLKEGSSPDAQVAASNALVNITTNQDRVVAFLVDSHAVPTLVQVLGDSPMRVRVSVANLVSAMAEQCVVAREEFVRANVTRPLVSLLSMDTVLADPMAGRASLHSLVLNLSNAGDATSDGSSRGSSHHRRDREREVESPELRYHVKVCCAKALWKLSKGCLLTFKKITETKGLLCLAKIIESETGELQLNCLMAVMEIAAVAESNADLRRAAFKRTAPAPKAVLDQLLRVVKEETNPALQIPAIKAIGSLARNFSGKDPQVLAPLVAQLGNRDVDVASEAAIALGKFVCQENYNYGDHSKAIVEELDGIPKLMSLLQINHRQQVHGLKLLCFLAINVGNSKVLEQERVLGTLERLARPVQSQHPELKDLFAKAIHHLTLYQPGAQLHRQPLGL 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01803 599 MobiDBLite consensus disorder prediction 328 342 - -
Cca11g01803 599 MobiDBLite consensus disorder prediction 321 342 - -
Cca11g01803 599 PANTHER ARMADILLO REPEAT ONLY 4 10 597 - -
Cca11g01803 599 SUPERFAMILY ARM repeat 169 585 IPR016024 -
Cca11g01803 599 Gene3D - 18 136 IPR036537 GO:0007166
Cca11g01803 599 PANTHER ARMADILLO REPEAT ONLY 1 PROTEIN 10 597 - -
Cca11g01803 599 Gene3D - 160 327 IPR011989 -
Cca11g01803 599 SMART arm_5 230 271 IPR000225 GO:0005515
Cca11g01803 599 SMART arm_5 187 229 IPR000225 GO:0005515
Cca11g01803 599 SMART arm_5 502 563 IPR000225 GO:0005515
Cca11g01803 599 Gene3D - 334 595 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01803 Cca-Chr11 42885479 42887278 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01803 - - gmx:100813824 974.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01803 11 42885479 42887278 Cca11g01803 11 42885479 42887278 ECH
Cca11g01803 11 42885479 42887278 Cca03g00425 03 6586973 6596539 PCT