Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00425 ATGTTCTCCGCCTCAATACCTACTAGGGATAAAATCTGGGTACCCATCCCCGTtatggatgTGGAAAGAAGAGAAATACGGATTTACGAGAAAGTTCCAGAGAAGGCTCAATTGCTGTATGTCAGTGTACTGCGCCCAGACCTATTGGGGTGGCGGAATCGCTCAGATACCCAACCCTTTGCAATGGCCTCAGCTTCGGAAAAGGCGACGCCACCACACCCACCTTCCGCCTCTTGCTTCTCCTCCGCCCCCGACTCCGCCGCCATTCCCCGCGCCGCCTCCGCCGACCTCCCCCTCATTCGCCCCGTCGATTCCTCCGCCAATGCTGCTAAGGGAGTCGCTTCAATGCCAAGGGCCCAGTCAAGCCACCCTTTGGACCCTTTAACTGCCGCTGAAATCTCTCTTAGAGATAGTATGCGCTTCATTGAAGCAGTTTTACTGGAGCCAGATAAAAATGTTGTTGCGCTGGCAGATGCATACTTCTTTCCACCATTCCAACCATCATTACTTCCAAGAACTAGAGGAGGACCGCTGATTCCAACTAAACTTCCTCCAAGATGTGCTAGACTTGTTGTTTACAATAAGAAATCAAATGAGACAAGTATATGGATTGTTCAATTGTCACAAGTACATGCAGTAACTCGAGGTGGTCATCACCGAGGAAAAGTAATTTCATCACATGTTGTTCCTGATGTTCAGCCTCCAATGGATGCTGAGGAATATGCCGAATGCGAAGCTGTTGTCAAAAGTTTTCCCCCATTTATAGAGGCTATGAAGAAAAGGGGTATTGAAGACATGGACCTTGTAATGGTTGATCCCTGGTGTGTTGGTTATTACAGTCAAGCAGATGCTCCTGGGAGAAGACTTGCTAAACCACTCATATTTTGTCGATCTGAGAGTGACTGCCCCATGGAAAATGGCTATGCCCGCCCAGTTGAGGGCATCTATGTTCTTGTTGATATGCAAAACATGGTGGTGATAGAGTTTGATGATCGTAAACTTGTTCCCCTTCCGCCGGTTGATCCCTTGAGGAACTATACTTCTGGTGAAACCAGAGGGAGCTCTGATAGAAGTGATATAAAACCCTTGCAAATTATTCAGCCTGAAGGTCCAAGCTTCCGTGTCAATGGGTACTTTGTTGAATGGCAGAAGTGGAATTTTCGTATTGGATTCACCCCCAAAGAAGGTTTGGTTATATATTCTGTTGCATATGTTGATGGTAGTCATGGGCGAAGGCCTGTTGCTCATAGGCTGAGTTTTGTGGAGATGGTTGTTCCCTATGGTGATCCAAACGACCCACATTACAGAAAAAATGCTTTTGATGCTGGGGAAGATGGCTTGGGAAAAAATGCGCATTCCCTCAAGAAGGGATGTGATTGTTTGGGCTACATTAAGTATTTTGATGCTCACTTCACAAATTTCACTGGTGGAGTGGAAACAATAGAAAACTGTGTATGTTTGCACGAAGAGGATCGTGGAATTCTCTGGAAGCATCAAGACTGGAGAACTGGCTTAGCAGAAGTCCGTAGATCTAGAAGACTTTCAGTATCTTTCATATGTACCGTGGCCAACTATGAGTATGGATTTTTTTGGCATTTTTATCAGGCAAGTAGGATTGAAGCTGAAGTTAAGCTTACTGGAATTCTCAGCCTAGGAGCCTTGCTGCCTGGAGAGTTTCGAAAATATGGAACTATGATTGCACCTGGTCTATATGCACCAGTTCATCAACACTTCTTTGTTGCTCGCATGGACATGTCTGTTGATTCTAAACCTGGTGAAGCTTTGAATCAGGTTGTGGAGGTCAATATGAAAGTCGAGGAACCAGGTGAGAATAATGTTCACAATAATGCTTTCTATGCTGAAGAGACTTTGCTCAGATCTGAATTGGAAGCCATGCGTGATTGCAATTCTTTGACTGCTCGCCATTGGATCGTAAGGAACACGAGAACATGCAATAGAACTGGTCAGTTGACAGGCTACAAGCTGTTACCTGGTGCAAACTGCTTACCATTGGCAGGCTCTGAAGCCAAGTTTTTAAGAAGAGCTGCTTTCTTGAAGCATAATTTTTGGGTAACAACATATTCACGCGATGAGATGTTTCCTGGAGGAGAATTTCCTAATCAAAATCCTCGTGTTGGTGAAGGACTAGCTACATGGGTTAAGCAGAACCGACCTTTGGAAGAAACTAATATAGTCATTTGGTATGTATTTGGAATCACACATGTTCCACGTTTGGAAGACTGGCCTGTTATGCCAGTAGAGCACATTGGTTTCATGCTCATGCCTCATGGATTTTTCAACTGTTCCCCTGCTGTGGATGTTCCGCCAAATGCATGTGAAATGGATTCTAAAGATAATGACATTAAGGATAATGGTTCTTCCAAACCAATTCCTAGTGGGTTAACGGCAAAGCTTTAG 2418 0.4471 MFSASIPTRDKIWVPIPVMDVERREIRIYEKVPEKAQLLYVSVLRPDLLGWRNRSDTQPFAMASASEKATPPHPPSASCFSSAPDSAAIPRAASADLPLIRPVDSSANAAKGVASMPRAQSSHPLDPLTAAEISLRDSMRFIEAVLLEPDKNVVALADAYFFPPFQPSLLPRTRGGPLIPTKLPPRCARLVVYNKKSNETSIWIVQLSQVHAVTRGGHHRGKVISSHVVPDVQPPMDAEEYAECEAVVKSFPPFIEAMKKRGIEDMDLVMVDPWCVGYYSQADAPGRRLAKPLIFCRSESDCPMENGYARPVEGIYVLVDMQNMVVIEFDDRKLVPLPPVDPLRNYTSGETRGSSDRSDIKPLQIIQPEGPSFRVNGYFVEWQKWNFRIGFTPKEGLVIYSVAYVDGSHGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDRGILWKHQDWRTGLAEVRRSRRLSVSFICTVANYEYGFFWHFYQASRIEAEVKLTGILSLGALLPGEFRKYGTMIAPGLYAPVHQHFFVARMDMSVDSKPGEALNQVVEVNMKVEEPGENNVHNNAFYAEETLLRSELEAMRDCNSLTARHWIVRNTRTCNRTGQLTGYKLLPGANCLPLAGSEAKFLRRAAFLKHNFWVTTYSRDEMFPGGEFPNQNPRVGEGLATWVKQNRPLEETNIVIWYVFGITHVPRLEDWPVMPVEHIGFMLMPHGFFNCSPAVDVPPNACEMDSKDNDIKDNGSSKPIPSGLTAKL 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00425 805 SUPERFAMILY Amine oxidase N-terminal region 121 235 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cca03g00425 805 Gene3D - 238 341 - -
Cca03g00425 805 SUPERFAMILY Amine oxidase catalytic domain 357 776 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cca03g00425 805 PANTHER AMINE OXIDASE 99 796 - -
Cca03g00425 805 MobiDBLite consensus disorder prediction 782 805 - -
Cca03g00425 805 MobiDBLite consensus disorder prediction 62 82 - -
Cca03g00425 805 Pfam Copper amine oxidase, N3 domain 234 337 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cca03g00425 805 PANTHER COPPER AMINE OXIDASE 99 796 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cca03g00425 805 SUPERFAMILY Amine oxidase N-terminal region 233 350 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cca03g00425 805 Pfam Copper amine oxidase, enzyme domain 363 771 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cca03g00425 805 Gene3D - 106 236 - -
Cca03g00425 805 Gene3D Copper amine oxidase, catalytic domain 349 776 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00425 Cca-Chr3 6586973 6596539 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00425 K00276 - gmx:100798722 1402.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00425 03 6586973 6596539 Cca03g00425 03 6586973 6596539 ECH
Cca11g01803 11 42885479 42887278 Cca03g00425 03 6586973 6596539 PCT