Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01795 ATGGATCCCCACCCAGGAACGTTCCCCATTCTCTCCTACGTCATGTCCCGTCTCCCATCCTTCGGCCCCAGAACGCCCCCAtccgcgtcaacctcaacctccaccgccaccgccacctcttcccactcccatttcgacatcgaacagccacactcctcctccgcctccgccgccgcctccccttccgccATCGTGGGCCAAATGCCCAATCTCGCCGACCCCGAACTCCTGGCCTCCATGACGCGCGCCATCTCGGACGTCTCCCAGGCCCGATCCGTGCTCAAGGTCATTGGGCCCCGGCCCACCCacgaggacgtcgacgaggcgaaggccaagatgagcgacctggacgCCCACCTCTCCCGCCAACTGGAGGAGATCGTGGGCCTCCCCAGGCCCCCCGAGATCGAGGAGCCCCGCTGGCGGGCCCACCTGGCCGAAAAAGAGAAGAGCTGCAGGGACTCCGTGGAGAAAGAGAAGCGCATCCTCAAGTCCCTCATTCACCTCGACCAGATGCACGACGAGTACGAGAAGCTCCTCAAGAACGCCGAAAAGCGATTGGTCAAGATGTacgaggacgacggcgacaacgccaaccccaacgacaacgacaccgaGGTCAAAGAACAGGTTGAGGGGATACTTCAGGAGGCCTACGGAAAAGGCCTCGAGCGTGTCGATCTTTCCGAGAAGCGCCTCAAGTACCTTCCTGAAGCATTTGGCCGCATTCCTACCTTGGTCGTGCTCCATGCTTCCACCAATCAACTTTCGGTGATTCCTGACTCCATAACTGGATTGCAAAATCTCGAGGACCTTAATCTCTCCAACAATGCTTTGGAGTCACTTCCAGATTCAATTGGCTTGTTGCAGAAGTTGAAATTCCTTAATGTCTCCGGCAACAAGCTCACTGCCCTTCCTGATTCCATTAGTCAATGCAAGTCATTGGTGGAGTTAGATGCAAGCTTTAACAGCCTCACATATTTGCCAACAAACATTGGATATGAATTGCATAGTTTGCAGAAGCTCATGATTCATTTGAACAAGATTCGATCTCTTCCCTCGTCTGTTTGTGAGATGAAATCCTTGCGCTATCTGGATGCTCACTTTAATGAGCTGAATGGGCTTCCCATTGCAATTGGGAAATTGACTAATCTTGAAGTTATGAACCTGAGCAGCAACTTCAGTGACCTTAAGCAACTTCCTGAGACATTTGGTGATCTGATTAACCTCAAGGATTTGGACCTCAGCAACAACCAAATTCATGCACTTCCTGATACTTTTGGCCGCCTTGATAATTTGACCAAGCTGAATTTGGAGCAGAATCCTCTTGAAGTGCCACCAATGGAGATTGTGAACCAAGGGGTCCAAGCTGTGAAGAGTTTCATGGTCCAGAGGTTGATTGATATATTGGCAGAGGAAGAAAGAAAAAGCGCGAATGAATTGCAAGAACAAGAGAATGGCTGGTTAACAAGAAGCACCTCTTGGCTGAAGACTGTTTCTGAAAATGTATCTGAGATGATTATGTCCCCCAAAACTCCCAAAGAAGCTTTTCTGAACCAGCAGCTATGA 1569 0.4353 MDPHPGTFPILSYVMSRLPSFGPRTPPSASTSTSTATATSSHSHFDIEQPHSSSASAAASPSAIVGQMPNLADPELLASMTRAISDVSQARSVLKVIGPRPTHEDVDEAKAKMSDLDAHLSRQLEEIVGLPRPPEIEEPRWRAHLAEKEKSCRDSVEKEKRILKSLIHLDQMHDEYEKLLKNAEKRLVKMYEDDGDNANPNDNDTEVKEQVEGILQEAYGKGLERVDLSEKRLKYLPEAFGRIPTLVVLHASTNQLSVIPDSITGLQNLEDLNLSNNALESLPDSIGLLQKLKFLNVSGNKLTALPDSISQCKSLVELDASFNSLTYLPTNIGYELHSLQKLMIHLNKIRSLPSSVCEMKSLRYLDAHFNELNGLPIAIGKLTNLEVMNLSSNFSDLKQLPETFGDLINLKDLDLSNNQIHALPDTFGRLDNLTKLNLEQNPLEVPPMEIVNQGVQAVKSFMVQRLIDILAEEERKSANELQEQENGWLTRSTSWLKTVSENVSEMIMSPKTPKEAFLNQQL 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01795 522 SMART LRR_typ_2 243 265 IPR003591 -
Cca11g01795 522 SMART LRR_typ_2 313 335 IPR003591 -
Cca11g01795 522 SMART LRR_typ_2 289 312 IPR003591 -
Cca11g01795 522 SMART LRR_typ_2 430 453 IPR003591 -
Cca11g01795 522 SMART LRR_typ_2 336 359 IPR003591 -
Cca11g01795 522 SMART LRR_typ_2 382 406 IPR003591 -
Cca11g01795 522 SMART LRR_typ_2 407 429 IPR003591 -
Cca11g01795 522 SMART LRR_typ_2 266 288 IPR003591 -
Cca11g01795 522 ProSiteProfiles Leucine-rich repeat profile. 409 430 IPR001611 GO:0005515
Cca11g01795 522 Coils Coil 106 126 - -
Cca11g01795 522 Pfam Leucine rich repeat 245 302 IPR001611 GO:0005515
Cca11g01795 522 Pfam Leucine rich repeat 314 372 IPR001611 GO:0005515
Cca11g01795 522 Pfam Leucine rich repeat 384 443 IPR001611 GO:0005515
Cca11g01795 522 Coils Coil 166 193 - -
Cca11g01795 522 ProSiteProfiles Leucine-rich repeat profile. 291 312 IPR001611 GO:0005515
Cca11g01795 522 MobiDBLite consensus disorder prediction 23 61 - -
Cca11g01795 522 Gene3D Ribonuclease Inhibitor 145 327 IPR032675 -
Cca11g01795 522 Gene3D Ribonuclease Inhibitor 334 464 IPR032675 -
Cca11g01795 522 MobiDBLite consensus disorder prediction 21 61 - -
Cca11g01795 522 PRINTS Leucine-rich repeat signature 269 282 - -
Cca11g01795 522 PRINTS Leucine-rich repeat signature 407 420 - -
Cca11g01795 522 ProSiteProfiles Leucine-rich repeat profile. 268 289 IPR001611 GO:0005515
Cca11g01795 522 SMART LRR_bac_2 336 355 - -
Cca11g01795 522 SMART LRR_bac_2 289 308 - -
Cca11g01795 522 SMART LRR_bac_2 266 285 - -
Cca11g01795 522 SMART LRR_bac_2 359 378 - -
Cca11g01795 522 SMART LRR_bac_2 243 262 - -
Cca11g01795 522 SMART LRR_bac_2 407 426 - -
Cca11g01795 522 SMART LRR_bac_2 312 331 - -
Cca11g01795 522 SMART LRR_bac_2 382 403 - -
Cca11g01795 522 PANTHER LEUCINE-RICH REPEAT-CONTAINING 35 512 - -
Cca11g01795 522 SUPERFAMILY L domain-like 217 448 - -
Cca11g01795 522 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 35 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01795 Cca-Chr11 42796881 42799577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01795 223 482 Receptor kinase-like Gene Family AT5G56040 29.667 1.40e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01795 - - gmx:100782818 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01795 11 42796881 42799577 Cca11g01795 11 42796881 42799577 ECH
Cca11g01795 11 42796881 42799577 Cca03g00415 03 6431945 6435449 PCT