Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00415 ATGGATCCAAACCCCGGAACCTTCCCTCTCCTCTCCTACGTCATGTCGCGTCTCCCTTCGCTCACTCCCAAACCCGCCGCCGCCGCCAATTCCGATTCCGACCACTTCGACATCGAGCAGCCACGCGCGCCGGAGATCGTGGGGCAAATGCCGCACCTGGCGGACCCGGACCTGGTGGCGTCGATGGGCCGGGCCGTGTCCCAGGTGGACCAGGCCCGCTCCGTCCTGAAGCTGATCGGGGAGCGGCCCACGCATGAGGAGGTGGACAATGCCCGGGCCAGAGTGGCGGAGATCGAGGCCCAGCTCTCCCGCGAGCTGGAGGAGATCGTGCTGCAGGCCCGGCCCGCGGAAGTGGAGATCCACGGGTGGCGGGCCCAGCAGGCCGAGAAGGAGAGGGAGCGCAGGGAGTGGGCCGAGAGGGAGAAGCGGGTCTGGAAGTCGGTGCTGCAGCTGGACGAGATGCACGAGGCGTACGAGAAGGTTGTGAGGGAGGCTGAGAAACGGTTGGTGAAAATGTACGAGGATAGGGATGTtggcgttggcgatggcgatggtgatggggttggtgaGGAAGTGAACGAAGAGGTTGTGGGGATTCTGCAAGAGGCTTATGGCAAAGGAATGGAGCGTGTCAACCTTTCTGGACGCCAATTGAGGCTCTTGCCTGAAGCTTTTGGTCGAATCCCTGGCTTGCTCGTGCTTGATCTTTCAAGCAATCAACTATCGGCAATTCCTGACTCGATAGCTGGATTGCAAAACCTTGAGGAGCTTAATCTCTCTTCAAATCTTTTGGAATCACTGCCAGATTCCATTGGGTTGTTACAAAGGTTGAAATTGCTAAGTGTCTCTGGAAATAAGCTGACTGCGCTTCCTGATCCCATCTGTCAGTGCAGATCATTGGTGGAGTTGGACGTAAGCTTTAACAATCTGTCATATTTGCCCACAAACATTGGATATGAATTACCGAACTTACAGAAACTCATGATTCAGTTGAACAAGATACGATCTCTTCCCTCATCTATTTGTGAGTTGAAGTCCTTGCGCTATTTGGATGCTCACTTTAACGAGCTACATGGGCTTCCCATTGCAATTGGAAGACTGACTAGTCTTGAAGTTCTCAACCTGAGCAGTAATTTCAGTGACCTCAGAGAACTTCCTGAGACATTTGGTGATTTGACTAACCTCAGGGAATTGGACTTAAGCAACAATCAGATTCATGCACTTCCTGATACATTTGGTCGCCTTGATAACTTGACCAAGTTAAACTTGGAGCAGAATCCTCTTGAATTGCCTCCATTGGATATTGTAAATCAAGGGGTTGAAGCCATTAAGACTTTCATGGCCAAGAGGTGGATTGAGATATTGTTGGAGGAAGAAAGGAAAAGCAACCAAGAAATGCAAGAACAAGAACAGGGTGGTTGGTTAACACGAAGCACCTCCTGGTTGAAGAATGTTTCTGGAAATGTAATGGGGTACATCGGAACTACCGTTGCATCTCCTATGACACCCAAATCTCCCAGAGATGCATACCTCGATCAGCAGCTATGA 1548 0.5032 MDPNPGTFPLLSYVMSRLPSLTPKPAAAANSDSDHFDIEQPRAPEIVGQMPHLADPDLVASMGRAVSQVDQARSVLKLIGERPTHEEVDNARARVAEIEAQLSRELEEIVLQARPAEVEIHGWRAQQAEKERERREWAEREKRVWKSVLQLDEMHEAYEKVVREAEKRLVKMYEDRDVGVGDGDGDGVGEEVNEEVVGILQEAYGKGMERVNLSGRQLRLLPEAFGRIPGLLVLDLSSNQLSAIPDSIAGLQNLEELNLSSNLLESLPDSIGLLQRLKLLSVSGNKLTALPDPICQCRSLVELDVSFNNLSYLPTNIGYELPNLQKLMIQLNKIRSLPSSICELKSLRYLDAHFNELHGLPIAIGRLTSLEVLNLSSNFSDLRELPETFGDLTNLRELDLSNNQIHALPDTFGRLDNLTKLNLEQNPLELPPLDIVNQGVEAIKTFMAKRWIEILLEEERKSNQEMQEQEQGGWLTRSTSWLKNVSGNVMGYIGTTVASPMTPKSPRDAYLDQQL 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00415 515 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 3 496 - -
Cca03g00415 515 Pfam Leucine rich repeat 369 428 IPR001611 GO:0005515
Cca03g00415 515 Pfam Leucine rich repeat 220 264 IPR001611 GO:0005515
Cca03g00415 515 Pfam Leucine rich repeat 298 357 IPR001611 GO:0005515
Cca03g00415 515 SMART LRR_bac_2 251 270 - -
Cca03g00415 515 SMART LRR_bac_2 367 388 - -
Cca03g00415 515 SMART LRR_bac_2 392 411 - -
Cca03g00415 515 SMART LRR_bac_2 228 247 - -
Cca03g00415 515 SMART LRR_bac_2 274 293 - -
Cca03g00415 515 SMART LRR_bac_2 321 340 - -
Cca03g00415 515 SMART LRR_bac_2 297 316 - -
Cca03g00415 515 SMART LRR_bac_2 344 363 - -
Cca03g00415 515 SUPERFAMILY L domain-like 207 433 - -
Cca03g00415 515 ProSiteProfiles Leucine-rich repeat profile. 394 415 IPR001611 GO:0005515
Cca03g00415 515 Coils Coil 88 108 - -
Cca03g00415 515 Gene3D Ribonuclease Inhibitor 201 455 IPR032675 -
Cca03g00415 515 ProSiteProfiles Leucine-rich repeat profile. 253 274 IPR001611 GO:0005515
Cca03g00415 515 PANTHER LEUCINE-RICH REPEAT-CONTAINING 3 496 - -
Cca03g00415 515 Coils Coil 452 472 - -
Cca03g00415 515 Coils Coil 148 175 - -
Cca03g00415 515 PRINTS Leucine-rich repeat signature 231 244 - -
Cca03g00415 515 PRINTS Leucine-rich repeat signature 392 405 - -
Cca03g00415 515 SMART LRR_typ_2 274 297 IPR003591 -
Cca03g00415 515 SMART LRR_typ_2 392 414 IPR003591 -
Cca03g00415 515 SMART LRR_typ_2 251 273 IPR003591 -
Cca03g00415 515 SMART LRR_typ_2 415 438 IPR003591 -
Cca03g00415 515 SMART LRR_typ_2 367 391 IPR003591 -
Cca03g00415 515 SMART LRR_typ_2 321 344 IPR003591 -
Cca03g00415 515 SMART LRR_typ_2 228 250 IPR003591 -
Cca03g00415 515 SMART LRR_typ_2 298 320 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00415 Cca-Chr3 6431945 6435449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00415 208 467 Receptor kinase-like Gene Family AT5G56040 29.968 5.77e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00415 - - gmx:100803823 835.099
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00415 03 6431945 6435449 Cca03g00415 03 6431945 6435449 ECH
Cca11g01795 11 42796881 42799577 Cca03g00415 03 6431945 6435449 PCT