Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01790 ATGGACTTCGACTTCAGGGATAGTTTTCACTCTGTCAAGCACCTCTCTGCTGTGCAAGCTGCTAGACTTCACTCTGATGTGGATAATGATGGCCGGTGTGATATCCGATGTCCCTTTTGTGATTTTGAAATTGAAGTTCCTGTGCTCTGCAGCAATTTGGAAGAAGAGCATTGCCTTGCCCTAAAAAATGTGGTTTGTCCCGTATGTGAAGAAAATTTAGGGAAGGATGCAATCATGCAATTTTCACATTCAAGCTCTCGAAAGTGGGCATGGAAGCCTGAGAAATCTAGCATCTGGTCTGGTAACTCTGCAATGTTTGGCAAGAAACTGGCTACCAGGGGAAACAAACAAGAATCAATACCAGATCCACTTTTGTCACCATTTATCTGCAACGTGCCAATTCCAAACTCTAACAATTCCCATTCAGATGAAAACTTCAGCTCCAGCAATAAGGATATAGACATTCCTGATGCAAAAAGGACTGGTACAGATGCACGTGAAATGGGTGATGAGAAGGATCAACAAGAGAGAAGGATGAAGGCAGATTTTGTTCAACAGTTGGTGTTCTCAACCATATTCGAGTAA 585 0.4256 MDFDFRDSFHSVKHLSAVQAARLHSDVDNDGRCDIRCPFCDFEIEVPVLCSNLEEEHCLALKNVVCPVCEENLGKDAIMQFSHSSSRKWAWKPEKSSIWSGNSAMFGKKLATRGNKQESIPDPLLSPFICNVPIPNSNNSHSDENFSSSNKDIDIPDAKRTGTDAREMGDEKDQQERRMKADFVQQLVFSTIFE 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01790 194 MobiDBLite consensus disorder prediction 140 178 - -
Cca11g01790 194 PANTHER PROTEIN DEHYDRATION-INDUCED 19 1 193 IPR033347 -
Cca11g01790 194 PANTHER PROTEIN DEHYDRATION-INDUCED 19 HOMOLOG 5 1 193 - -
Cca11g01790 194 Pfam Stress-induced protein Di19, C-terminal 114 192 IPR027935 -
Cca11g01790 194 MobiDBLite consensus disorder prediction 147 178 - -
Cca11g01790 194 Pfam Drought induced 19 protein (Di19), zinc-binding 35 83 IPR008598 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01790 Cca-Chr11 42750489 42755489 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01790 - - gmx:100801801 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01790 11 42750489 42755489 Cca11g01790 11 42750489 42755489 ECH
Cca11g01790 11 42750489 42755489 Cca03g00410 03 6361570 6365114 PCT