Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01788 ATGATGCAAGACTCAATTGGGGTCCCTGCTTGCTTTTCTTCAGCAGAAAAGCAGCATAGCGAAGATCACGGGGCTGTGACTCGTTCAGGTCAGAGCGTCTATATGTCTGTGTATAGAACAAAGGTGGCTGATCAGTGCCGTTTGATCACCATCACATGGTGCAAGAACCTCTTGCTTCACGGGCTTTCGGTGTCAGTGGAAGGCCCAGAAGGAGAGGAACAGTACACATGCAAGGTTGAGCTGAAGCCGTGGTACTTTTGGAGGAAACAAGGTTCCAAGCGCTTTGTGGTAGATGGTAAAGCTGTTGATGTTTTCTGGGACCTTAAGGCTGCCAAGTTTAACGGCGAAACGGAACCAACCTCGGAGTACTACGTGGCAGTGGTTTGTGATGACGAGGTTGTGCTGCTTCTTGGTGATCTCAAGAAAGAGGCGTACAGAAGGACGGGGTGTAGACCAGCACTTATTGACCCCATTTTGGTTTCGAAGAAAGAGCACATTTTTGGGAAGAAGAAGTTCTCCACTAGAGCCAAGTTCCACGAGAAGGGTAGGTGGCATGAGATTTCAATCGAGTGCAAGAACAAGGGAAGTGGCGATTCTCCAAGTGGGGTTCAGCCAGAGATGGAGATAAGGATCGATGGGCACTTGGTGATTCATGTCAAGCACTTGCAGTGGAAGTTTAGAGGCAACGAGTCGATTCATCTCAGCAAGATGAGAGTAGAGGTATACTGGGATGTTCATGATTGGCTTTTTAGTCCTGGTTTAAAGCATGCTTTATTCATTTTTAAGCCAATTTTGTCATCGTCTAGTACCACTACTACTtcttctatgtcatcttcaacgtcaccttcgttatcatcctcatcACCTCCACTATCTAGTGATCAGTCAAGGGGTTCTGGATCAGTGGAGGGTTTTAGTGTTAGTGGGACATCAGAGTTTTGCTTGTTTCTCTATGCTTGGAAGGTTGAGTGA 972 0.4486 MMQDSIGVPACFSSAEKQHSEDHGAVTRSGQSVYMSVYRTKVADQCRLITITWCKNLLLHGLSVSVEGPEGEEQYTCKVELKPWYFWRKQGSKRFVVDGKAVDVFWDLKAAKFNGETEPTSEYYVAVVCDDEVVLLLGDLKKEAYRRTGCRPALIDPILVSKKEHIFGKKKFSTRAKFHEKGRWHEISIECKNKGSGDSPSGVQPEMEIRIDGHLVIHVKHLQWKFRGNESIHLSKMRVEVYWDVHDWLFSPGLKHALFIFKPILSSSSTTTTSSMSSSTSPSLSSSSPPLSSDQSRGSGSVEGFSVSGTSEFCLFLYAWKVE 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01788 323 PANTHER EXPRESSED PROTEIN 2 323 IPR008586 -
Cca11g01788 323 Pfam Plant protein of unknown function (DUF868) 29 321 IPR008586 -
Cca11g01788 323 MobiDBLite consensus disorder prediction 272 303 - -
Cca11g01788 323 Coils Coil 322 323 - -
Cca11g01788 323 PANTHER OS01G0909400 PROTEIN 2 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01788 Cca-Chr11 42732730 42734583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01788 9 323 EF-hand Containing Proteins AT5G28150 37.421 1.10e-69 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01788 - - gmx:100779755 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01788 11 42732730 42734583 Cca11g01788 11 42732730 42734583 ECH
Cca11g01788 11 42732730 42734583 Cca03g00407 03 6333742 6335269 PCT