Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01764 ATGGAGCAATTCTGGTCTGGGAGTGCCATCAATGAAAACAAAGGAATGGTAGATAATTTGCAGCGTTATGGAGTAATCACATCCAAAAAGGTTGCTGAAGTAATGGAAACCATTGATAGAGCTTTGTTTGTACCTGGTGGACTCCAACCTTATGTGGACAGTCCTATGCCAATAGGCTACAATGCCACTATCTCTGCGCCGCATATGCATGCCTCCTGCCTTCAGTTGCTGGAGAAAAATTTGCAACCTGGGATGCGTGCTCTGGACGTTGGCTCTGGAACTGGATACTTGACTGCATGCTTTGCTTTGATGGTCGGACCCGAAGGCCGTGCTATTGGTGTAGAACATATTCCTGAGTTGGTCTCTTTTTCAACTGAGAATATTAAAAAAAGTGCTGCAGCTCAACCATTGAAAGATGGTTCCCTTTCTGTGCATATTGGTGATGGAAGGCAAGGTTGGCCTGAGTTTGCTCCTTATGATGCCATTCACGTTGGAGCAGCAGCACCAGAAATCCCCCAACCACTTATTGACCAGTTGAAGCCGGGTGGTAGAATGGTTATTCCTGTTGGAAACATATTTCAAGATTTAAAGGTCGTGGATAAGAACTCTGACGGTTCTATCAGTATCCGAACTGAGACTTCTGTTCGATATGTGCCTCTCACTAGCAGAGAAGCTCAACTGCGAGGTCAGTGA 693 0.456 MEQFWSGSAINENKGMVDNLQRYGVITSKKVAEVMETIDRALFVPGGLQPYVDSPMPIGYNATISAPHMHASCLQLLEKNLQPGMRALDVGSGTGYLTACFALMVGPEGRAIGVEHIPELVSFSTENIKKSAAAQPLKDGSLSVHIGDGRQGWPEFAPYDAIHVGAAAPEIPQPLIDQLKPGGRMVIPVGNIFQDLKVVDKNSDGSISIRTETSVRYVPLTSREAQLRGQ 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01764 230 TIGRFAM pimt: protein-L-isoaspartate O-methyltransferase 12 226 IPR000682 GO:0004719|GO:0036211
Cca11g01764 230 Pfam Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 12 224 - -
Cca11g01764 230 CDD AdoMet_MTases 86 189 - -
Cca11g01764 230 PANTHER PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE 3 229 IPR000682 GO:0004719|GO:0036211
Cca11g01764 230 ProSitePatterns Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 147 162 IPR000682 GO:0004719|GO:0036211
Cca11g01764 230 Gene3D Vaccinia Virus protein VP39 5 229 IPR029063 -
Cca11g01764 230 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 13 198 IPR029063 -
Cca11g01764 230 PANTHER PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE 3 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01764 Cca-Chr11 42307938 42310366 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01764 K00573 - gmx:100527082 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01764 11 42307938 42310366 Cca11g01764 11 42307938 42310366 ECH
Cca11g01764 11 42307938 42310366 Cca03g00393 03 6070362 6075081 PCT