Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00393 ATGAGCGTGCAGTTCCACTACTACCCTTTACCTGCATTGCCCTATGCATCAAAACCCACTCACTCGCTCCCTCTCACCCTCTCCAACCACTCGCCTCCTCGCTCTTCCATCATCCCCAATCTCTTCTTCTTCCAAAACCCTAATTTCCTCACGGGGAACACTCTCTTCATTAGGATGCAGCGATTTTGCTCTGCGAGTGGCGTGAGTAAGAACAAAGCAATGGTGGAGAGGTTGCAACGCTTTGGAGTAATCACATCAAGTAAGGTGGCTGAAGTAATGGAGACGGTTGATAGAGCCTTGTTTGTACCTGATGGGGCTGCACCTTATGATGACAGTCCCATGGCCATAGGATACAATGCCACTATATCTGCACCGCATATGCATGCCATGTGTCTTCAGTTGCTGGAGGAGAATTTAAAGCCTGGGATGCATGCTCTGGATGTTGGCTCTGGAACAGGGTACCTGACTGCGTGCTTTGCCTTGATGGTTGGACCCCAAGGCCGGGCTGTTGGTGTAGAGCATATTCCTGAATTGGTTTCTGTTTCAATAGAGAATATTCAGAAAAGTGCTGCAGCTACACTATTGAAGGATGGTTCCCTTTCTGTTCATGCTGGTGATGGAAGGCAAGGTTGGCCAGAGTTTGCACCTTATGATGCCATTCACGTTGGAGCAGCCGCACCGGAAATTCCTCAACCACTTATTGACCAGTTGAAGCCTGGAGGTAGAATGGTGATTCCTGTTGGAAACGTATTTCAAGATTTAAAGGTGGTGGATAAGAATTCTGATGGTTCCGTCAGTGTCCGCACTGAGACGTCCGTTCGTTATGTGCCCCTCACTAGTCGAGAATCTCAACTTCGAGGTTACTAA 867 0.4844 MSVQFHYYPLPALPYASKPTHSLPLTLSNHSPPRSSIIPNLFFFQNPNFLTGNTLFIRMQRFCSASGVSKNKAMVERLQRFGVITSSKVAEVMETVDRALFVPDGAAPYDDSPMAIGYNATISAPHMHAMCLQLLEENLKPGMHALDVGSGTGYLTACFALMVGPQGRAVGVEHIPELVSVSIENIQKSAAATLLKDGSLSVHAGDGRQGWPEFAPYDAIHVGAAAPEIPQPLIDQLKPGGRMVIPVGNVFQDLKVVDKNSDGSVSVRTETSVRYVPLTSRESQLRGY 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00393 288 TIGRFAM pimt: protein-L-isoaspartate O-methyltransferase 69 284 IPR000682 GO:0004719|GO:0036211
Cca03g00393 288 CDD AdoMet_MTases 146 247 - -
Cca03g00393 288 ProSitePatterns Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 205 220 IPR000682 GO:0004719|GO:0036211
Cca03g00393 288 PANTHER PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE 44 288 - -
Cca03g00393 288 Gene3D Vaccinia Virus protein VP39 65 288 IPR029063 -
Cca03g00393 288 PANTHER PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE 44 288 IPR000682 GO:0004719|GO:0036211
Cca03g00393 288 Pfam Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 70 282 - -
Cca03g00393 288 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 71 255 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00393 Cca-Chr3 6070362 6075081 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00393 K00573 - gmx:100810913 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00393 03 6070362 6075081 Cca03g00393 03 6070362 6075081 ECH
Cca11g01764 11 42307938 42310366 Cca03g00393 03 6070362 6075081 PCT