Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01759 ATGGAAGTAAAGAAAGTTCTATGGGTTGCTCTATCGTTTGCTTTGGTTCTTGGAGTGGCCAAGAGCCTTGATTTCAGTGAAAATGAGTTAGAATCCGAGGAAGGGTTGTGGGATTTGTACGAGAGATGGAGGAGCCACCACACGGTTTCTCGAAGTctcagtgagaagaaaaaccggttcaacgtgttcaaagccaacgtgatgcatgtccacaataccaataaaatggacaagccttacaagctgaagttgaacaggtttgctgacatgaccaaccatgaattcaggagcatctatgctggctccagggttgatcatcacagaaggttccgaggcacgccacgtgagaatggtactttcatgtatcacaactttgatagggttccttcttctgtggattggaggaagaaaggtgctgtcactagtgtaaaggatcaaggccaatgtggtagttgttgggcgttttcaactattgtagctgttgaaggtattaaccaaatcaagacacataagctagtgtccttgtctgagcaagaacttgtagattgtgacactacagggaatcaaggatgcaacggtgggttaatggaatatgcgttcgattttatcaagcaaaatggtataacaacggaaaacaattacccttatgaagCAAAAGATGGTATTTGTGATTTATCAAAGGAGAGTGAACCTAAAGTGTcaattgatggccatgagactgtgcccgtgaacaacgaggctgcattgctcaaagctgttgcaaatcaacctgtatcggtagccattgaagctgcgggatataactttcagttctacTCAGAGggagtatttacgggagagtgtggcactaatctggatcatggagtagcaattgtggggtatggaacaactaaagatggaaccaaatattggattgtgaaaaactcatggggatctgagtggggagaaaagggctacattagaatgcaaagaagcatatctgataagaaaggtctatgtggcatagcaatggaggcttcttatccaaTCAAAAAGTCCTCTAGCAATCCAAGGGACCATTCATCATTTCCTAAAGATGAACTTTAA 1086 0.1022 MEVKKVLWVALSFALVLGVAKSLDFSENELESEEGLWDLYERWRSHHTVSRSLSEKKNRFNVFKANVMHVHNTNKMDKPYKLKLNRFADMTNHEFRSIYAGSRVDHHRRFRGTPRENGTFMYHNFDRVPSSVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTHKLVSLSEQELVDCDTTGNQGCNGGLMEYAFDFIKQNGITTENNYPYEAKDGICDLSKESEPKVSIDGHETVPVNNEAALLKAVANQPVSVAIEAAGYNFQFYSEGVFTGECGTNLDHGVAIVGYGTTKDGTKYWIVKNSWGSEWGEKGYIRMQRSISDKKGLCGIAMEASYPIKKSSSNPRDHSSFPKDEL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01759 361 Pfam Cathepsin propeptide inhibitor domain (I29) 40 95 IPR013201 -
Cca11g01759 361 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 303 322 IPR025661 -
Cca11g01759 361 PANTHER KDEL-TAILED CYSTEINE ENDOPEPTIDASE CEP1 20 350 - -
Cca11g01759 361 SUPERFAMILY Cysteine proteinases 37 343 IPR038765 -
Cca11g01759 361 SMART pept_c1 128 343 IPR000668 GO:0006508|GO:0008234
Cca11g01759 361 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 146 157 IPR000169 -
Cca11g01759 361 SMART Inhibitor_I29_2 40 95 IPR013201 -
Cca11g01759 361 CDD Peptidase_C1A 129 342 IPR039417 -
Cca11g01759 361 Gene3D Cysteine proteinases 15 345 - -
Cca11g01759 361 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 20 350 - -
Cca11g01759 361 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 285 295 IPR025660 -
Cca11g01759 361 Pfam Papain family cysteine protease 128 343 IPR000668 GO:0006508|GO:0008234
Cca11g01759 361 PRINTS Papain cysteine protease (C1) family signature 146 161 IPR000668 GO:0006508|GO:0008234
Cca11g01759 361 PRINTS Papain cysteine protease (C1) family signature 287 297 IPR000668 GO:0006508|GO:0008234
Cca11g01759 361 PRINTS Papain cysteine protease (C1) family signature 303 309 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01759 Cca-Chr11 42256746 42259183 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01759 K16292 - gmx:100806581 650.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01759 11 42256746 42259183 Cca11g01759 11 42256746 42259183 ECH
Cca11g01759 11 42256746 42259183 Cca03g00387 03 6015923 6018421 PCT