Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00387 ATGGCAATGAAGAAGCTCTTGTGGGTTGTTCTGTCCCTTGCTTTGGTTCTCGGAGTGGCCAATAGCTTTGACTTTCATGACAAAGATTTGGCATCCGAGGAAAGCTTGTGGGACTTGTACGAGAGATGGAGGAGTCACCACACGGTTTCGCGAAGcctcagtgacaagcacgagaggtttaacgtgttcaaagcaaatgtgatgcatgtccacaacactaacaaaatggagaagccttacaagctgaaactgaacaagttttctgacatgaccaaccacgaattcaggagcacctatgctggctcaaaggtgaatcactacagaatgttcagaggcacaccacgtgggaacgggaccttcatgtatgagaaagttggccctgtccctccatctgtagattggaggaagaaaggtgctgttactgatgtaaaagatcaaggccactgtggtagttgctgggcgttttcaaccgttgtagctgtcgaaggcattaaccaaatcaagacaaataagctagtcaccttgtctgaacaagagctggtggactgtgacaacaaaaaaaactcaggatgcaatggtgggttaatggaatatgcttttgagtatatcaagcaaaagggaggcataacaacagaaagaaattacccttaCACAGCACAAAAAGGAACCTGTGATGCATCAAAGGAGAATGaccaagctgtgtcaattgatggccatgaaaaagtccctgctaacgatgaaaatgcattgctcaaagctgttgccaaccaacctgtctcagtagccatagatgctgggggatatgatttgcagttctacTCTGAGggagtatttactggatattgtagcacagagctaaatcatggtgtagcggttgtggggtatggaacaactgttgatgggactagttactggatagtgaagaactcttggggaccagaatggggagaaaagggttacataagaatgcaaaggaatatatctaacaaagagggactatgtggcatagctatggaggcttcctacccgGTCAAAAACACCTTCAAGAATCCAACAAGTCCTTCATCATCTATTAAAGATGAACTTTGA 1089 0.1074 MAMKKLLWVVLSLALVLGVANSFDFHDKDLASEESLWDLYERWRSHHTVSRSLSDKHERFNVFKANVMHVHNTNKMEKPYKLKLNKFSDMTNHEFRSTYAGSKVNHYRMFRGTPRGNGTFMYEKVGPVPPSVDWRKKGAVTDVKDQGHCGSCWAFSTVVAVEGINQIKTNKLVTLSEQELVDCDNKKNSGCNGGLMEYAFEYIKQKGGITTERNYPYTAQKGTCDASKENDQAVSIDGHEKVPANDENALLKAVANQPVSVAIDAGGYDLQFYSEGVFTGYCSTELNHGVAVVGYGTTVDGTSYWIVKNSWGPEWGEKGYIRMQRNISNKEGLCGIAMEASYPVKNTFKNPTSPSSSIKDEL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00387 362 SMART pept_c1 128 344 IPR000668 GO:0006508|GO:0008234
Cca03g00387 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 304 323 IPR025661 -
Cca03g00387 362 Gene3D Cysteine proteinases 15 346 - -
Cca03g00387 362 PRINTS Papain cysteine protease (C1) family signature 146 161 IPR000668 GO:0006508|GO:0008234
Cca03g00387 362 PRINTS Papain cysteine protease (C1) family signature 288 298 IPR000668 GO:0006508|GO:0008234
Cca03g00387 362 PRINTS Papain cysteine protease (C1) family signature 304 310 IPR000668 GO:0006508|GO:0008234
Cca03g00387 362 Pfam Cathepsin propeptide inhibitor domain (I29) 40 95 IPR013201 -
Cca03g00387 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 146 157 IPR000169 -
Cca03g00387 362 PANTHER KDEL-TAILED CYSTEINE ENDOPEPTIDASE CEP1 20 350 - -
Cca03g00387 362 SMART Inhibitor_I29_2 40 95 IPR013201 -
Cca03g00387 362 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 20 350 - -
Cca03g00387 362 SUPERFAMILY Cysteine proteinases 35 345 IPR038765 -
Cca03g00387 362 Pfam Papain family cysteine protease 128 344 IPR000668 GO:0006508|GO:0008234
Cca03g00387 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 286 296 IPR025660 -
Cca03g00387 362 CDD Peptidase_C1A 129 343 IPR039417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00387 Cca-Chr3 6015923 6018421 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00387 K16292 - gmx:548011 658.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00387 03 6015923 6018421 Cca03g00387 03 6015923 6018421 ECH
Cca11g01759 11 42256746 42259183 Cca03g00387 03 6015923 6018421 PCT