Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01742 ATGGCACCAACTGTACCTATAGAATTTGCTGGACAAAAGAAATCTAGAAAGTGTTCTCTTTCACAAATGATGGGGAAAAAATCACGAAAGTACTCCAAAGGCCATGCCACCGGTTTTGTTCCAGATTTTCGTCATGCTGTAGAGACTATGGGTGAATCGGAAGGACTTTGTAGCTCGGGAAGGGTCGATAATGAGTTGACTATGTCAGAAGGCTCGTGTGCCCCGAAGAGGAAGTGTCTTACTTCTAATCTTGATGGTCATGAGAGTTTTGATGTGCCATTTCAGGTGTTGTCTTTATCTAAGATGAAACGTTCTGGGAGAAAGGACTTGAAATTGAGGTTAAAAGCTGAACTTCAAAAAGTAAAGACACTCCAAAAGAAATTTGCTGGTATGAATTCAACCACTACTGAATTATCTCCATATAGTGACATACGGAGCTGCAGTGAGGGAGAGAAGAAGCCTCCACTGGAGAGCCAGCATAGCACACTGGAATCATCAGCACTACATGGTAAGAAGCGCCCACCACCAAAGCGTAATGGCCCAAAAACGAAGGGTAGTATTTCTGGGCAATTTGAAGCTGTGAAATCTGCTGCATCAGTGGCTCCTTCATATGCTGCATTGGTGAAGCAGTCCGAGTCGTTACTTAATCGTGTGATGTCTCATCAATTTGGTAAAGTTTTTGACAAGCCAGTTGACGTTGTGAAATGGAACATTCCAGATTATTTCACTATCATCAAGCACCCGATGGATTTGGGTACCGTGAAGAGTAGACTGATTTCGGGTGAATATTCAAGTCTCATGGATTTTGCTGCAGATGTGCGGCTGACTTTCTCAAATGCAATGACTTATAATCCACCTGGCAATGATGTGCATGTCATGGCAGAGACACTAAATAAATATTTTGAAACAAGATGGAAGCCTATAGAAAAGAAGATTCTTGCCATTGATGATGTACCATCTGAGCCTTCAAAATCCACTACTTGTGTTGAAACTGAAATTGCTGACCTAAATCCTCCTGCGAAAAAGAAGAAAATAACACCTAATGACACTAATGTCAAGCCAGAGTCCATTAAAAGAATCATGACTGATAAGGAGAAGCAAAAGTTGAGTATGGAATTGGAGGCGTCGCTTGCAGATTTGCCTGAAAACATTATTGATTTCTTGAAGGAGCAAAGTAATACTGTTGGCCAGACAAATGATGATGAAATTGAGATTGATATAGATGCCCTCGGTGATGTTACATTGTTTAAACTGCGGAAGCTTCTTGATGATTTTTTGCTAGACAAGCAAACCCAAGCAAAAGCTGGACCATGTGAAATGGAGCCTGCCAATGAATCTGGATTTAGCAATTTATCAGTGCAACCATGTAAAGGCAATGAACCAGTTAAAGAGGACGTGGACATTGTTGGTGGGAATGATCCTCCTCTTTCAAGTTACCCTCTTGTAGAGATTGAGAATGATGGTACCAACAAAACCAGCCAACACAGTAGTTCAAGCAGCTCTAGTAGTGAATCTGGCTCTTCATCCAGTGATTCAGATAGTGAGTCAGACAATGCTAAAGCATCAGTGTCTTTGAATCCTATTAAGGAAAAAGTAGGATCTGGCTTGTCTCTAGATCAAAAGGAGGGGAATCTTGATAATTCAGAAACAGGAATTGATTCAGTGAATGCTGGCCATGTTGAGCAGAGTTCCCAGACTAATTCCGTTAGTGATGAACCTGAAAACCATCAAGAGGGGGAGAATGCTCCATCTAAGAAGCAAGTATCCCCCGAAAAGCTTTACCGTGCAGCTTTATTAAGAAGCCGATTTGCTGACACCATACTTAAAGCTCAGGAAAAGGCGCTTGAAAAGGTTGACAAGCGGGATCCTGAAAAACTCCGCATGGAGCGAGAAGAGCTTGAAAGGCGACAAAAAGAGGAGAAAGCTCGATTGCAGGCAGAGGCAAAGGCTGCAGAAGAGGTTCGGAAGAAAGCTGAAGCGGAAGCAGTAGCTGAAGCCAAAAGAAAAAGGGAACTTGAGAGAGAAGCAGCTCGTCAGGCTTTGCAAAAGGTAACTTTGAAAGATAAGTGA 2070 0.4227 MAPTVPIEFAGQKKSRKCSLSQMMGKKSRKYSKGHATGFVPDFRHAVETMGESEGLCSSGRVDNELTMSEGSCAPKRKCLTSNLDGHESFDVPFQVLSLSKMKRSGRKDLKLRLKAELQKVKTLQKKFAGMNSTTTELSPYSDIRSCSEGEKKPPLESQHSTLESSALHGKKRPPPKRNGPKTKGSISGQFEAVKSAASVAPSYAALVKQSESLLNRVMSHQFGKVFDKPVDVVKWNIPDYFTIIKHPMDLGTVKSRLISGEYSSLMDFAADVRLTFSNAMTYNPPGNDVHVMAETLNKYFETRWKPIEKKILAIDDVPSEPSKSTTCVETEIADLNPPAKKKKITPNDTNVKPESIKRIMTDKEKQKLSMELEASLADLPENIIDFLKEQSNTVGQTNDDEIEIDIDALGDVTLFKLRKLLDDFLLDKQTQAKAGPCEMEPANESGFSNLSVQPCKGNEPVKEDVDIVGGNDPPLSSYPLVEIENDGTNKTSQHSSSSSSSSESGSSSSDSDSESDNAKASVSLNPIKEKVGSGLSLDQKEGNLDNSETGIDSVNAGHVEQSSQTNSVSDEPENHQEGENAPSKKQVSPEKLYRAALLRSRFADTILKAQEKALEKVDKRDPEKLRMEREELERRQKEEKARLQAEAKAAEEVRKKAEAEAVAEAKRKRELEREAARQALQKVTLKDK 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01742 689 MobiDBLite consensus disorder prediction 135 187 - -
Cca11g01742 689 MobiDBLite consensus disorder prediction 540 572 - -
Cca11g01742 689 ProSiteProfiles Bromodomain profile. 219 291 IPR001487 GO:0005515
Cca11g01742 689 SUPERFAMILY Bromodomain 202 311 IPR036427 GO:0005515
Cca11g01742 689 Gene3D - 192 317 IPR036427 GO:0005515
Cca11g01742 689 Coils Coil 107 127 - -
Cca11g01742 689 MobiDBLite consensus disorder prediction 435 590 - -
Cca11g01742 689 PRINTS Bromodomain signature 272 291 IPR001487 GO:0005515
Cca11g01742 689 PRINTS Bromodomain signature 238 254 IPR001487 GO:0005515
Cca11g01742 689 PRINTS Bromodomain signature 222 235 IPR001487 GO:0005515
Cca11g01742 689 PRINTS Bromodomain signature 254 272 IPR001487 GO:0005515
Cca11g01742 689 CDD Bromo_plant1 209 305 IPR037377 -
Cca11g01742 689 MobiDBLite consensus disorder prediction 483 523 - -
Cca11g01742 689 PANTHER TRANSCRIPTION FACTOR GTE8 28 684 - -
Cca11g01742 689 Gene3D - 354 432 IPR038336 -
Cca11g01742 689 Pfam Bromodomain 213 295 IPR001487 GO:0005515
Cca11g01742 689 Coils Coil 627 689 - -
Cca11g01742 689 ProSiteProfiles NET domain profile. 351 433 IPR027353 -
Cca11g01742 689 PANTHER TRANSCRIPTION FACTOR GTE10 28 684 - -
Cca11g01742 689 SMART bromo_6 200 310 IPR001487 GO:0005515
Cca11g01742 689 Pfam Bromodomain extra-terminal - transcription regulation 361 423 IPR027353 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01742 Cca-Chr11 42027504 42037401 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01742 - - gmx:100787770 894.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00357 03 5471748 5476485 Cca11g01742 11 42027504 42037401 ECH
Cca11g01742 11 42027504 42037401 Cca11g01742 11 42027504 42037401 ECH