Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00357 ATGGCACCAACTGTACCTATAGAGTTTGCTGGACAAAAGGAATCCAGAAAGTACTCTCATTCGCAGGTCATGGGCAAGTCTAGGAAATACTCCAAGGGTTATGCTACTGGCTTTGTTCCCGATTTTCGGCATGCTGTAGAGACTATGGGTGAATCAGAAGGGTTGGGTAGCTTGGGTAGGGTTGATTTAGAGAGGACGGCTTCCGCTGATTCTTGTGCACCCAAGAGGAAATGTGTTGGTTCCAATGCTGGCGGTTATGGTAGTTTTGATGTACCGTTTCAACTTTTCTCCTTGTCCAAGATGTCGGGCTTTGAGAGGAAGGATCTGAAACTGAGGTTGGCTTGGGAGCTTGAACAAGTGAGGGAGCTTCAGAAGAAATACGATGGTATGAGCTCTAATGTTGTTGGATTGTCTCCTTCCAGTGACATAAGGAGCTGCAGTGCTGGACAGAAGAGGCCTAAGTTGGATAGCCAGCATATGACAACGGAAGGATCGATGCAGCTGCATAGTAAGAAAAGGCCCTTACCGGGGCATAGTGGTCCCAAGACAAAGAAGAGTATGTCTGGGCGTTTTGAAAATGCGAAACCTGCTGCTGCACCAGTGACTACTTCGAATGCTACATTTATGAAACCGTGTGAGACATTGCTTAACCGATTGATGTCCCATCAATTTGGTTGGGTTTTTAACACTCCAGTTGATGTTGTTAAATTGAACATTCCGGATTATTTCACTGTCATCAAGCATCCAATGGATTTGGGTACTGTGAAGAGGAGAATAACTTCTGGTGACTATTCAAATCCCATGGATTTTGCTGCTGATGTGCGGCTGACTTTCTCAAATGCAATGACATATAATCCACCAGGCAATGATGTACACATCATGGCAGATACCCTTAGTAAATTTTTTGAAACGAGATGGAAGGCCATAGAGAAGAAAATTCCTGTTATTGATTGTGTCCCATCTGAGCCTTCTAGACCTACTCGTGTGGAAACAGAAATTTCTGACCGAGTTCCTCCCACAAAAAAGAAGAAAGTAACGCCAAATGATACTAATGTCAAGCCAGAGCCTGTTAAAAGAATCATGTCTGCCGAGGAGAAGCATAAATTGAGTATAGAGTTGGAGTCATTGATTGGAGAGCTCCCTGACACCATTGTTGATTTCTTGAGAGAGCAAACTTATAATGCAGGGCAAACCAATGATGAAGAAATTGAGATTGATATCGATGCTCTCAGTGATGATACTTTATTCAAACTGCGGAAGCATCTTGATGATTATATACTGGACAAGCAAAGATCCCAGGCAAAAGCTGGACAGTGTGAAATGGAGCTTGTGAATGAATCAGGATTCAGCAATTCATCAATTCAGCCATGCAAAGGCAATGAACAGGTTGTGGAGGATTTGGACACTGTTGGTGGGAATGATCCTCCTATTTCAAATTATCCTCCATTAGAGATTGAAAAAGATGGAACCAATAGAAACAGAAAATGCAGTAGCTCAAGCAGCTCTAGTAGTGATTCTGGCTCTTCATCCAGTGATTCAGACTCTGGAAGTTCACCTGGTAATGAGTTGGATATGATGCCTAAAGCATCAGAACCTCTCAGTGCAACCAAGGAAAATTTAGGATCTGGCTTGACTTCAGATCAAAACAAAGGGGATCCTGGTAATTCAGAAACTGGAAAGGATTCAACAAATGTGGGAGGCCAGGTTGAGCAGAGTTCCCAGACTAAGCCTGTTGCTACTGAGCCAGAAAGCCATCAAGAGGGGGAGAGTGCTGCATCTAAGAGGCAAGTCTCTCCTGAAAAGCTCTACCGTGCAGCTTTATTAAGGAGCCGTTTTGCTGACACCATACTTAAAGCTCAAGAGAAGGCCCTTGAAAAGGATGAAAAGCGAGATCCTGAAAAACTTAGGATAGAGCGAGAAGATCTTGAAAGGCGGCAGAGAGAAGAGAAAGCTCGGTTGCAGGCAGAGGCCAAAGCTGCAGAAGAAGCTCGGAAGAAAGCTGAAGCAGAAGCTGCAGCCGAAGCCAAAAGGAAAAGGGAACTGGAAAGAGAAGCAGCCCGTCAGGCTTTACAAAAGATGGAGAAAACTGTTGAAATCAATGAGAGCAGTCAATTTTTGGAAGATCTAGAGATGCTGAGTTCTGTACATGATGAACGAATGCCAAGTTTCAAAGAGGAGACAAACGCGGATGAACCTGAAAATGGATTGGGCAGGATCAAGCTACAGGGAAATCCCTTAGAACAACTAGGATTGTACATGAAGGCCgacgatgatgatgaggaggaggatgatCTGTCACCGGCTGTAGGACCATCAAATGATGTGGAAGAAGGAGAAATTGATTGA 2346 0.4352 MAPTVPIEFAGQKESRKYSHSQVMGKSRKYSKGYATGFVPDFRHAVETMGESEGLGSLGRVDLERTASADSCAPKRKCVGSNAGGYGSFDVPFQLFSLSKMSGFERKDLKLRLAWELEQVRELQKKYDGMSSNVVGLSPSSDIRSCSAGQKRPKLDSQHMTTEGSMQLHSKKRPLPGHSGPKTKKSMSGRFENAKPAAAPVTTSNATFMKPCETLLNRLMSHQFGWVFNTPVDVVKLNIPDYFTVIKHPMDLGTVKRRITSGDYSNPMDFAADVRLTFSNAMTYNPPGNDVHIMADTLSKFFETRWKAIEKKIPVIDCVPSEPSRPTRVETEISDRVPPTKKKKVTPNDTNVKPEPVKRIMSAEEKHKLSIELESLIGELPDTIVDFLREQTYNAGQTNDEEIEIDIDALSDDTLFKLRKHLDDYILDKQRSQAKAGQCEMELVNESGFSNSSIQPCKGNEQVVEDLDTVGGNDPPISNYPPLEIEKDGTNRNRKCSSSSSSSSDSGSSSSDSDSGSSPGNELDMMPKASEPLSATKENLGSGLTSDQNKGDPGNSETGKDSTNVGGQVEQSSQTKPVATEPESHQEGESAASKRQVSPEKLYRAALLRSRFADTILKAQEKALEKDEKRDPEKLRIEREDLERRQREEKARLQAEAKAAEEARKKAEAEAAAEAKRKRELEREAARQALQKMEKTVEINESSQFLEDLEMLSSVHDERMPSFKEETNADEPENGLGRIKLQGNPLEQLGLYMKADDDDEEEDDLSPAVGPSNDVEEGEID 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00357 781 PANTHER TRANSCRIPTION FACTOR GTE8 25 764 - -
Cca03g00357 781 MobiDBLite consensus disorder prediction 535 581 - -
Cca03g00357 781 CDD Bromo_plant1 209 306 IPR037377 -
Cca03g00357 781 PANTHER TRANSCRIPTION FACTOR GTE10 25 764 - -
Cca03g00357 781 SUPERFAMILY Bromodomain 203 311 IPR036427 GO:0005515
Cca03g00357 781 MobiDBLite consensus disorder prediction 494 520 - -
Cca03g00357 781 Pfam Bromodomain extra-terminal - transcription regulation 361 423 IPR027353 -
Cca03g00357 781 ProSiteProfiles Bromodomain profile. 220 292 IPR001487 GO:0005515
Cca03g00357 781 Coils Coil 106 126 - -
Cca03g00357 781 MobiDBLite consensus disorder prediction 141 168 - -
Cca03g00357 781 PRINTS Bromodomain signature 223 236 IPR001487 GO:0005515
Cca03g00357 781 PRINTS Bromodomain signature 239 255 IPR001487 GO:0005515
Cca03g00357 781 PRINTS Bromodomain signature 255 273 IPR001487 GO:0005515
Cca03g00357 781 PRINTS Bromodomain signature 273 292 IPR001487 GO:0005515
Cca03g00357 781 MobiDBLite consensus disorder prediction 718 733 - -
Cca03g00357 781 MobiDBLite consensus disorder prediction 141 198 - -
Cca03g00357 781 Pfam Bromodomain 212 296 IPR001487 GO:0005515
Cca03g00357 781 ProSiteProfiles NET domain profile. 351 433 IPR027353 -
Cca03g00357 781 Gene3D - 191 316 IPR036427 GO:0005515
Cca03g00357 781 SMART bromo_6 201 311 IPR001487 GO:0005515
Cca03g00357 781 MobiDBLite consensus disorder prediction 466 599 - -
Cca03g00357 781 Coils Coil 639 696 - -
Cca03g00357 781 Gene3D - 355 433 IPR038336 -
Cca03g00357 781 MobiDBLite consensus disorder prediction 328 349 - -
Cca03g00357 781 MobiDBLite consensus disorder prediction 322 354 - -
Cca03g00357 781 MobiDBLite consensus disorder prediction 622 687 - -
Cca03g00357 781 MobiDBLite consensus disorder prediction 718 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00357 Cca-Chr3 5471748 5476485 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00357 - - gmx:100776368 1152.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00357 03 5471748 5476485 Cca11g01742 11 42027504 42037401 ECH
Cca03g00357 03 5471748 5476485 Cca03g00357 03 5471748 5476485 ECH