Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01729 CAGAAATTAACTTGGATGAGGAGAGACAAAGAGTACGAGCGTGTGCTAAGCTACTTCGACGACGACGGTGACGGCAAGATTTCGGCGTCTGAGCTAAGGAAGCGTTTGGGTGGCGAGGTTCTGTTGAAGGAAGCGGAAATGGCGATTGAGGCCTTGGACTCCGACGGTGACGGGTTGCTGTGTTTGGAGGATTTGGTGAATCTCATGGAGGAAGTGGGAGAGGAGGAGAAGTTGAAGGACTTAAGGGAAGCCTTTGATTTGTACGACACTGAACGTTGTGGCTTCATCACGCCCAAGGCCTTGAAGAGGATGCTCCACAAATTGGGGGACTCCAAGTCCACCAAAGAGTGCAAAGCCATGATTAGTGCCTTTGATTTGAACGGGGATGGCATGCTTAGCTTTGAAGAATTCACAATTATGATGAACTGA 429 0.4942 QKLTWMRRDKEYERVLSYFDDDGDGKISASELRKRLGGEVLLKEAEMAIEALDSDGDGLLCLEDLVNLMEEVGEEEKLKDLREAFDLYDTERCGFITPKALKRMLHKLGDSKSTKECKAMISAFDLNGDGMLSFEEFTIMMN 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01729 142 ProSitePatterns EF-hand calcium-binding domain. 53 65 IPR018247 -
Cca11g01729 142 Gene3D - 75 142 - -
Cca11g01729 142 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 8 142 - -
Cca11g01729 142 SUPERFAMILY EF-hand 10 141 IPR011992 -
Cca11g01729 142 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Cca11g01729 142 CDD EFh 80 141 IPR002048 GO:0005509
Cca11g01729 142 CDD EFh 11 69 IPR002048 GO:0005509
Cca11g01729 142 ProSiteProfiles EF-hand calcium-binding domain profile. 76 111 IPR002048 GO:0005509
Cca11g01729 142 SMART efh_1 44 72 IPR002048 GO:0005509
Cca11g01729 142 SMART efh_1 11 39 IPR002048 GO:0005509
Cca11g01729 142 SMART efh_1 116 142 IPR002048 GO:0005509
Cca11g01729 142 SMART efh_1 80 108 IPR002048 GO:0005509
Cca11g01729 142 Pfam EF hand 16 34 IPR002048 GO:0005509
Cca11g01729 142 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Cca11g01729 142 ProSiteProfiles EF-hand calcium-binding domain profile. 43 75 IPR002048 GO:0005509
Cca11g01729 142 ProSiteProfiles EF-hand calcium-binding domain profile. 112 142 IPR002048 GO:0005509
Cca11g01729 142 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 8 142 - -
Cca11g01729 142 Gene3D - 6 74 - -
Cca11g01729 142 Pfam EF-hand domain pair 79 141 IPR002048 GO:0005509
Cca11g01729 142 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01729 Cca-Chr11 41854012 41854527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01729 8 141 EF-hand Containing Proteins AT1G76650 48.175 9.41e-35 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01729 K13448 - gmx:100816563 227.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00340 03 5295104 5296168 Cca11g01729 11 41854012 41854527 ECH
Cca11g01729 11 41854012 41854527 Cca11g01729 11 41854012 41854527 ECH