Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00340 ATGGAGAGGCACGTGGGGTTTGAGGATGTTCTAAGATATTTTGATGAAGATGGGGATGGGAAGGTTTCGCCTTTGGAGCTGAGGAAGGGGTTGGGAATGATGGGTGGGGAGCTTTTGATGAAAGAAGCTGAGATGGCAATTGAAGCAGTGGATTCAGATGGTGATGGGTTGCTGAGTTTGGAGGATTTTGTGGCTCTTGTGGAAGCAGAGGGAGAGGAGCAGAAGTTGAAGGACTTGAAGGGAGCTTTTGAGATGTATGACTCTGAGGGGTGTGGGTTCATAACCCCCAAAGGGTTGAAGAGAATGCTCAAGAAGATGGGTGAGTCCAAGTCCATTGATGAGTGCAAAGGGATGATCAAACAGTTTGATTTGAATGGGGATGGCATGCTTAGCTTTGAAGAATTCAGAATCATGATGCAGTGA 423 0.4681 MERHVGFEDVLRYFDEDGDGKVSPLELRKGLGMMGGELLMKEAEMAIEAVDSDGDGLLSLEDFVALVEAEGEEQKLKDLKGAFEMYDSEGCGFITPKGLKRMLKKMGESKSIDECKGMIKQFDLNGDGMLSFEEFRIMMQ 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00340 140 Gene3D - 70 140 - -
Cca03g00340 140 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Cca03g00340 140 ProSitePatterns EF-hand calcium-binding domain. 123 135 IPR018247 -
Cca03g00340 140 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Cca03g00340 140 Pfam EF-hand domain pair 77 140 IPR002048 GO:0005509
Cca03g00340 140 Pfam EF-hand domain pair 11 67 IPR002048 GO:0005509
Cca03g00340 140 SMART efh_1 6 34 IPR002048 GO:0005509
Cca03g00340 140 SMART efh_1 42 70 IPR002048 GO:0005509
Cca03g00340 140 SMART efh_1 78 106 IPR002048 GO:0005509
Cca03g00340 140 SMART efh_1 114 140 IPR002048 GO:0005509
Cca03g00340 140 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Cca03g00340 140 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 6 140 - -
Cca03g00340 140 CDD EFh 78 140 IPR002048 GO:0005509
Cca03g00340 140 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Cca03g00340 140 ProSiteProfiles EF-hand calcium-binding domain profile. 110 140 IPR002048 GO:0005509
Cca03g00340 140 CDD EFh 7 67 IPR002048 GO:0005509
Cca03g00340 140 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 6 140 - -
Cca03g00340 140 SUPERFAMILY EF-hand 6 139 IPR011992 -
Cca03g00340 140 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Cca03g00340 140 Gene3D - 2 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00340 Cca-Chr3 5295104 5296168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00340 2 140 EF-hand Containing Proteins AT1G76650 46.763 3.68e-40 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00340 K13448 - gmx:100779557 222.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00340 03 5295104 5296168 Cca11g01729 11 41854012 41854527 ECH
Cca03g00340 03 5295104 5296168 Cca03g00340 03 5295104 5296168 ECH