Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01724 ATGAACAACAATATCAACAACCCAACGAAGAATGCTGCAACCCCGTCGTTTTTCGCCAATCCCGGTGTACCCTCCATCCCCATGAACCACCCATCACCGCACCTCCTCTCCCAACCCCAAGGCGCCGCCGCCGCCACCACCACACACTTCCACGGCCACTTCCAGCTCTCACAACCCCAAACCCACGTGGTGGCACAACCGCACGTGCACAACAATGCCACCACCAACACCCACGTGTCACCGCCACCCCCTGCACCCCCGAAGCGCGCAAATCAGAAACCCCCTTCACGCCCTCCCGCTTCCTCCAACGCCACCCAATCCTCTGCCTTCAAGACCATGGAACTCACCGTGGCTCCTCCGAGAAAAAAGAGAAACTTTCCCGACAACCTAATTCCCCAAAAAATCGCAAACCTTGTTCCCGAGTCTGCTATTTACGCCAAGTTGCTTCAGCTCGAGTCTCACGTGGATTCTGCTCTCGTTAGGAAGAAAATCGACGTGCAGGAGGCTCTTAAAAACCCTTCCTGCGTTAGGAAAACGCTTAGAATTTATGTCTATAACACGTTTTCGATGGAGGACCCTTCTTGGGTGCTTAGGATAACCGGAAGAGTGTTGGAAGATGGTAAGGACCCTGTTGCAGATGGAATTCCGCTGAAGGAGAATCCAAAGTTCTCTGCTTTCTTCAAGAAGATTACGATATATTTGGATCAGGGTTTCTATCCGGAGAATCATGTTGTTGTATGGGATAATGCTCGTTCGCCGGTTCAACGCGATGGGTTCGAGGTGAAGAGGAAAGGAAACAAGGAATTCACTGCTGTCGTGAGAATGGTGATGAATTATTCGCCTGACAAGTTTGTGGTTTCAGCTCAATTGTCTAAAGTTTTGGGGATTGAGTTTGATTCGCGGTCTAGGATCATAGCTGCTCTTTGGCACTATGTGAAGGCTAAGAAGCTTCAGAGCCCGAATGACCCTTCGTTTTTCATGTGTGATGCTTCTCTCCAAAGGGTGTTTGGGGAGGAGAAGATGAAATTCTCCGTGGCTTCGCAGAAGATATCGCAGCATTTGTCGCCGCCGCAGCCTATACACGTGGAGCATAAGATCAAGCTTTGTGGAAATGGTCCATCCGGAACTACTTGTTATGATGTGCAGGTTGATGTGCCTCTTCCGCTAGAGAAGGATATGTCTGCATTCTTGGCAAGCACTGAGAGGCACAAAGAGATTGATGCTTTTGATAAAGTGATATGTGATTCCATAAAGAAGATCAATGAACATAGTAGGAGAAGGGCGTTCTTTCTCGGCTTTAGTCAGTCCCCAGCGGAGTTTATTAATGCTTTGATCGCTTCTCAGAGCAAGGATCTGAAGCTTGTTGCCGGTGATGTGAGCCATAATGTTGAAAATGAACGGCGTTCTGAGTTCTACCAACAACCGTGGGTTGAGGATGCTGTTGTTCGCTACCTGACCCGGAAAAATGCTCGAAGTGATACTCCTGGAAGCCTCTGA 1497 0.4923 MNNNINNPTKNAATPSFFANPGVPSIPMNHPSPHLLSQPQGAAAATTTHFHGHFQLSQPQTHVVAQPHVHNNATTNTHVSPPPPAPPKRANQKPPSRPPASSNATQSSAFKTMELTVAPPRKKRNFPDNLIPQKIANLVPESAIYAKLLQLESHVDSALVRKKIDVQEALKNPSCVRKTLRIYVYNTFSMEDPSWVLRITGRVLEDGKDPVADGIPLKENPKFSAFFKKITIYLDQGFYPENHVVVWDNARSPVQRDGFEVKRKGNKEFTAVVRMVMNYSPDKFVVSAQLSKVLGIEFDSRSRIIAALWHYVKAKKLQSPNDPSFFMCDASLQRVFGEEKMKFSVASQKISQHLSPPQPIHVEHKIKLCGNGPSGTTCYDVQVDVPLPLEKDMSAFLASTERHKEIDAFDKVICDSIKKINEHSRRRAFFLGFSQSPAEFINALIASQSKDLKLVAGDVSHNVENERRSEFYQQPWVEDAVVRYLTRKNARSDTPGSL 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01724 498 Gene3D SWIB/MDM2 domain 277 362 IPR036885 -
Cca11g01724 498 MobiDBLite consensus disorder prediction 95 113 - -
Cca11g01724 498 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 71 495 - -
Cca11g01724 498 MobiDBLite consensus disorder prediction 72 128 - -
Cca11g01724 498 Pfam SWIB/MDM2 domain 283 354 IPR003121 -
Cca11g01724 498 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 71 495 - -
Cca11g01724 498 MobiDBLite consensus disorder prediction 1 18 - -
Cca11g01724 498 ProSiteProfiles SWIB/MDM2 domain profile. 279 356 IPR003121 -
Cca11g01724 498 MobiDBLite consensus disorder prediction 1 46 - -
Cca11g01724 498 CDD SWIB_like 286 354 - -
Cca11g01724 498 MobiDBLite consensus disorder prediction 31 46 - -
Cca11g01724 498 MobiDBLite consensus disorder prediction 79 94 - -
Cca11g01724 498 SUPERFAMILY SWIB/MDM2 domain 275 364 IPR036885 -
Cca11g01724 498 SMART swib_2 280 359 IPR019835 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01724 Cca-Chr11 41774297 41777467 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Cca11g01724 SWIB 5.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01724 K11650 - gmx:100817271 811.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01724 11 41774297 41777467 Cca03g00336 03 5250608 5253426 PCT