Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00336 ATGAATAATCAAGCAAAGAATGTTGGTGCATCATCGTTGTTTGGTCATTCTGGAATGACCCCACAACCACATCACCCTAATCCCATTCAGCAGTGGAACCACCCAACCCCTTTGTTCTCTCAATCACAGTCAAAGTCACAGTCACACCCTCACACCCAAATCCCTGGTCTGTTTCAGTTTTCAGAGCCCCAATCCCATGTGCTagcacaagcacaagcccagtatgcacaggcacaaTTGCAGTCTCATGCTGCACGGGCTCATCCTCAACCTCAAACTCAGCCTTTTGCTCACTTGCATAATGTAAATACTAATACTGCTAATGGTACATCAACACCGCCGACTGGAAGTGCTAGGCGAGCAACCCTGAAACCCTCGACTAGGCCTCATAATTCGTCGAGTATGAACCAGTCCACGCTGTTTAGGACCATGGAATTAACCCCGGCTACTCGGCAAAAGAAGCAAACACCAGAAAAGGTGGCGGCAGTTTTGCCTGAGTCTGCTTTTTATACTCGATTGCTTGATTTTGAGGCTCAGGTAGATGCTGCTTTGGCCAGGAAAAAGGTTGATTTACAGGAGGCTAGGCTCCCGCACCATGTTCTGAGAACTCTTCGTGTTTATGTGTTTAACACCTTCTCAAATGTTGCAAAAATTGCTTCTGAGAATAAAGCTGATGAATCTTCATGGTCTCTCAAGTTAACTGGAAGGATATTGGAAGATGGTATGGATTCCTTGTCTGGAATTTCACAAAGATCAAGTCCTTCATACCCGAAGTTCTCTGCATTTTTCAAGAAAATTACCATACGCTTGGATCAAAGCCTTTATCCTGATAATCATGTCATTGTATGGGACAGTGCTCGTTCAGCTGCCCAGCAGGATGGTTTTGAGGTGAAGAGGAAAGGAAACAAAGAATTCACTGCAGTGATTGTAGTAGAAATGAATTATACACCCGAGAAGTTTATGGTTTCACCACAACTGTCTAAACTTTTAGGGATCGAGGTTGAGACCCGCCCAAGAATAATAGCTTCTCTTTTTAACTACATGAAGTCCAGGAAGCTACAGAGCCCTAATGACCCTTCATTATTCATATGTGATCCTTCTCTTCAAAGGGTGTTTGGGGAAGAGAAGATGGATTTCACCAAGATTTCTCACAAGTTATCACAACATTTGTCACAACCACAGCCTATACATTTGGAGCATAGCATCAAGCTTTCTGGACACTCTCCAGCTGTATCTGCATGTTACGATATACTAGTTGATGTGCCTTTTCCGATGGAAAAGGATAAGTCTACATTCTTGGCAAGCCTTGAGAGTCAAAAAGAGATTGAAGCTTATGATGAGGCAATTTGCACTTCCTTAAAGAATATCCAGGAGCATCATAGAAGACGAGCTTTCTTTCTCAGCTTTAGTCAGTCTCCAGCAGAGTTTATTAATACTTTGATTGCTTCTCAGAGCAAAGATCAAAAACTTGTTGCGGGAGATGCCAGCTATAATGTTGAAAAGGAACTGTGCACTGAATTCTACAATAAACCATGGGTTGAGGACGCAGTTATTCGTTACTTAAACCGCAAAACTGCTGGAAGTGATGCTCCTGGACGCCACTAA 1605 0.4212 MNNQAKNVGASSLFGHSGMTPQPHHPNPIQQWNHPTPLFSQSQSKSQSHPHTQIPGLFQFSEPQSHVLAQAQAQYAQAQLQSHAARAHPQPQTQPFAHLHNVNTNTANGTSTPPTGSARRATLKPSTRPHNSSSMNQSTLFRTMELTPATRQKKQTPEKVAAVLPESAFYTRLLDFEAQVDAALARKKVDLQEARLPHHVLRTLRVYVFNTFSNVAKIASENKADESSWSLKLTGRILEDGMDSLSGISQRSSPSYPKFSAFFKKITIRLDQSLYPDNHVIVWDSARSAAQQDGFEVKRKGNKEFTAVIVVEMNYTPEKFMVSPQLSKLLGIEVETRPRIIASLFNYMKSRKLQSPNDPSLFICDPSLQRVFGEEKMDFTKISHKLSQHLSQPQPIHLEHSIKLSGHSPAVSACYDILVDVPFPMEKDKSTFLASLESQKEIEAYDEAICTSLKNIQEHHRRRAFFLSFSQSPAEFINTLIASQSKDQKLVAGDASYNVEKELCTEFYNKPWVEDAVIRYLNRKTAGSDAPGRH 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00336 534 SUPERFAMILY SWIB/MDM2 domain 311 400 IPR036885 -
Cca03g00336 534 CDD SWIB_like 322 390 - -
Cca03g00336 534 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 91 532 - -
Cca03g00336 534 MobiDBLite consensus disorder prediction 1 57 - -
Cca03g00336 534 MobiDBLite consensus disorder prediction 101 141 - -
Cca03g00336 534 ProSiteProfiles SWIB/MDM2 domain profile. 315 392 IPR003121 -
Cca03g00336 534 Pfam SWIB/MDM2 domain 319 390 IPR003121 -
Cca03g00336 534 Gene3D SWIB/MDM2 domain 312 397 IPR036885 -
Cca03g00336 534 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 91 532 - -
Cca03g00336 534 SMART swib_2 316 395 IPR019835 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00336 Cca-Chr3 5250608 5253426 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Cca03g00336 SWIB 1.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00336 K11650 - gmx:100784907 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00336 03 5250608 5253426 Cca03g00336 03 5250608 5253426 ECH
Cca11g01724 11 41774297 41777467 Cca03g00336 03 5250608 5253426 PCT