Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca11g01723 | ATGGCAATGGAAACAATGGGAGAGAGTCCACGAAGCCCAGAAGCCAAGTTGGGGATGCGAGTGGGGGATTTGTGGGATATTCAGGAATCTCAGCTAAGTCCTACGGAGAAACTCAACGCTTGTTTTGAAAGCATCCCTGTTTCTGCTTTTCCTTTGTCTCCTTCAAACCAAGAGGTTGAGATAAAATCAGACGCGACCCTTGCTGAAGCCGTTAAGATTCTGGCACAACACAACGTTTTCAGCGCACCTGTGGTGGATGTTGATGCGTGTGAAGATGCCAGTTGGATGGACAGATACATCGGAATTGTTGAGTTTGCTGGAATTGTTGTGTGGATTTTGCATCAGTCTGAACCTACATCTCCTAGGAGTCCATCTACTCCATCCAGTGCAAAGGCTATTGCAGCTGCAGCTAATGGAGCGAATTTTGCAATGGAACTTGAAGCCTTAGGCCTAGGATCTGCTGCAACAACTTCAGGAAACTTTTTTGAGGATCTCACTTCTTCTGAACTTTATAAGAATACCAAGGTTGGTGATATTTCAGGGACATTCCGCTGGGCCCCATTTCTTGCTTTAGAGAAATCAAACTCATTCCTAACTATGCTCTTGCTGCTTTCTAAATACAAGATGAAGAGTGTGCCTGTGTTGGATTTAGGCTCTGGTAGAATTGATAACATCATTACACAATCTGCTGTGATTCATATGCTGGCAGAATGTGCTGGACTTCATTGGTTTGAGAGTTGGGGAACAAAGAAACTATCTGAAGTTGGTCTTCCCCTGGTGAAAGGAAATCATATCATCAAGGTTTATGAGGATGAACCTGTTCTTCAAGCATTTAAAATAATGAGGAAAAAGAGGGTTGGAGGGGTGCCTGTAATAGAAAGAGATAGCCAAAGGACAGTTGGTAATATAAGCTTGCGAGATGTTCAATTCTTGCTAAATGCACCAGAAATATATCATGATTATAGAGCTATTACAGTAAAGGACTTTCTGACTGCCGTTAGAAGCCACTTGGAGGAGAATACAAAAGCACACCCAATGTTAACTGAATTTGTTACATGCAAAGAGGACTGTACAATCAAAGAATTGATTCAACTGCTTGATCAAGAGAAGATTCACAGGGTCTATGTGGTGGACGATGAAGGAGATTTGCAAGGACTAATCACACTAAGAGATATCATCTCAAGGCTAGTACATGAACCACGTGGCTACTTTGGTGATTTCTTTGATGGTGTTCTACCGCTACCTGCAAACACGAGAGTTTAA | 1263 | 0.4244 | MAMETMGESPRSPEAKLGMRVGDLWDIQESQLSPTEKLNACFESIPVSAFPLSPSNQEVEIKSDATLAEAVKILAQHNVFSAPVVDVDACEDASWMDRYIGIVEFAGIVVWILHQSEPTSPRSPSTPSSAKAIAAAANGANFAMELEALGLGSAATTSGNFFEDLTSSELYKNTKVGDISGTFRWAPFLALEKSNSFLTMLLLLSKYKMKSVPVLDLGSGRIDNIITQSAVIHMLAECAGLHWFESWGTKKLSEVGLPLVKGNHIIKVYEDEPVLQAFKIMRKKRVGGVPVIERDSQRTVGNISLRDVQFLLNAPEIYHDYRAITVKDFLTAVRSHLEENTKAHPMLTEFVTCKEDCTIKELIQLLDQEKIHRVYVVDDEGDLQGLITLRDIISRLVHEPRGYFGDFFDGVLPLPANTRV | 420 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca11g01723 | 420 | CDD | CBS_pair_SF | 61 | 117 | - | - | |
| Cca11g01723 | 420 | CDD | CBS_pair_SF | 201 | 308 | - | - | |
| Cca11g01723 | 420 | CDD | CBS_pair_SF | 264 | 393 | - | - | |
| Cca11g01723 | 420 | ProSiteProfiles | CBS domain profile. | 346 | 404 | IPR000644 | - | |
| Cca11g01723 | 420 | Pfam | CBS domain | 265 | 308 | IPR000644 | - | |
| Cca11g01723 | 420 | Pfam | CBS domain | 346 | 397 | IPR000644 | - | |
| Cca11g01723 | 420 | ProSiteProfiles | CBS domain profile. | 259 | 321 | IPR000644 | - | |
| Cca11g01723 | 420 | ProSiteProfiles | CBS domain profile. | 52 | 119 | IPR000644 | - | |
| Cca11g01723 | 420 | Gene3D | - | 33 | 240 | IPR046342 | - | |
| Cca11g01723 | 420 | Gene3D | - | 249 | 399 | IPR046342 | - | |
| Cca11g01723 | 420 | PANTHER | AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT | 8 | 420 | - | - | |
| Cca11g01723 | 420 | SUPERFAMILY | CBS-domain pair | 30 | 236 | IPR046342 | - | |
| Cca11g01723 | 420 | SMART | cbs_1 | 264 | 313 | IPR000644 | - | |
| Cca11g01723 | 420 | SMART | cbs_1 | 57 | 113 | IPR000644 | - | |
| Cca11g01723 | 420 | SMART | cbs_1 | 349 | 397 | IPR000644 | - | |
| Cca11g01723 | 420 | SMART | cbs_1 | 187 | 236 | IPR000644 | - | |
| Cca11g01723 | 420 | PANTHER | BNAA06G16460D PROTEIN | 8 | 420 | - | - | |
| Cca11g01723 | 420 | SUPERFAMILY | CBS-domain pair | 249 | 406 | IPR046342 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca11g01723 | Cca-Chr11 | 41752186 | 41755487 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca11g01723 | - | - | gmx:100812388 | 704.901 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca11g01723 | 11 | 41752186 | 41755487 | Cca11g01723 | 11 | 41752186 | 41755487 | ECH | |
| Cca11g01723 | 11 | 41752186 | 41755487 | Cca03g00335 | 03 | 5243800 | 5247076 | PCT |