Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca03g00335 | ATGGTGAGAATGGGAGAGAGTCCAAAGAGTCCAGAGGCTAAGCTGGGGTTGCGAGTAGAGGATCTATGGGATGTTCAAGAGCCACAGCTGAGTCCTGATGAGAAACTCAATGCTTGCTTTGAGAGCATCCCTGTCTCTGCCTTCCCTTCACCCCCTTCAAATCAAGAAGTTGAGATAAAATCAGATGCCACCCTAGCCGAGGCAGTAAAAATACTTGCACAACATAACATCCTTAGTGCACCTGTGGTGGATGTAGATGCACCCGAAGATGCTAGTTGGATTGACAGATATATAGGAATAGTTGAGTTTGCTGGAATTGTTGTATGGATTCTGCATCAGTCTGAACCGACATCTCCCAGGAGTCCATCCAGTGGAGCTGCAGTTAATGGAATAACTTCTACTCAAGAACATGAAGCATTAGGCCTTGAATCTGCGGCGAAAACTTCAGGAAATTTCTTTGAGGATCTGACTTCTTCTCAACTTTATAAGAATACAAAGGTTCGTGACATTTCAGGGTCATTCCGTTGGGCTCCATTTCTTGCTTTGGAGAGATCAAACTCATTTTTGACCATGCTTTTGCTGCTTTCCAAGTACAAGATGAAGAGTGTTCCTGTGGTGGACTTAGGTGCAGGTCGAATTGACAACATTATTACGCAGTCTGCTGTAATTCACATGTTGGCAGAATGTGCTGGTCTTCACTGGTTTGAGAGTTGGGGAACCAAGAAACTGTCTGATGTTGGTCTTCCCATGGTGACACCAAATCATATCATCAAGGTTTATGAAGATGAACCAGTGCTTCAAGCATTTAAACTGATGAGGAAAAAGAGAATTGGAGGGTTGCCAGTGATGGAAAGGGGTGGCAGCAGGGCAATTGGTAACATAAGTCTGCAAGATGTTCAATTCCTCCTAACTGCTCCTGAAATCTACCATGATCATAGATCTATTACAGCAAAAGACTTTCTGATAGCCGTCAGAAGCTACTTAGAAAAGCATGAAGGGGTCTCTCCTATGTCAGGTGACCTGATTACATGCAACAAGGATTGCACGATCAAAGAACTGATTCAACTGCTTGACCATGAGAAGATTCATCGAGTCTACGTTGCTGACAATGATGGGAATCTTGAAGGGCTGATCACACTCAGAGATATCATCTCAAGGCTAGTACACGAGCCCCGTGGCTATTTTGGTGATTTCTTTGATGGGGTTCTCCCCATGCCTCCAAACAGCAGGGTTTGA | 1236 | 0.4434 | MVRMGESPKSPEAKLGLRVEDLWDVQEPQLSPDEKLNACFESIPVSAFPSPPSNQEVEIKSDATLAEAVKILAQHNILSAPVVDVDAPEDASWIDRYIGIVEFAGIVVWILHQSEPTSPRSPSSGAAVNGITSTQEHEALGLESAAKTSGNFFEDLTSSQLYKNTKVRDISGSFRWAPFLALERSNSFLTMLLLLSKYKMKSVPVVDLGAGRIDNIITQSAVIHMLAECAGLHWFESWGTKKLSDVGLPMVTPNHIIKVYEDEPVLQAFKLMRKKRIGGLPVMERGGSRAIGNISLQDVQFLLTAPEIYHDHRSITAKDFLIAVRSYLEKHEGVSPMSGDLITCNKDCTIKELIQLLDHEKIHRVYVADNDGNLEGLITLRDIISRLVHEPRGYFGDFFDGVLPMPPNSRV | 411 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca03g00335 | 411 | PANTHER | BNAA06G16460D PROTEIN | 7 | 411 | - | - | |
| Cca03g00335 | 411 | Gene3D | - | 39 | 232 | IPR046342 | - | |
| Cca03g00335 | 411 | ProSiteProfiles | CBS domain profile. | 250 | 312 | IPR000644 | - | |
| Cca03g00335 | 411 | ProSiteProfiles | CBS domain profile. | 49 | 117 | IPR000644 | - | |
| Cca03g00335 | 411 | ProSiteProfiles | CBS domain profile. | 337 | 395 | IPR000644 | - | |
| Cca03g00335 | 411 | SMART | cbs_1 | 178 | 227 | IPR000644 | - | |
| Cca03g00335 | 411 | SMART | cbs_1 | 55 | 111 | IPR000644 | - | |
| Cca03g00335 | 411 | SMART | cbs_1 | 340 | 388 | IPR000644 | - | |
| Cca03g00335 | 411 | SMART | cbs_1 | 255 | 304 | IPR000644 | - | |
| Cca03g00335 | 411 | CDD | CBS_pair_SF | 59 | 223 | - | - | |
| Cca03g00335 | 411 | Pfam | CBS domain | 56 | 102 | IPR000644 | - | |
| Cca03g00335 | 411 | Pfam | CBS domain | 337 | 388 | IPR000644 | - | |
| Cca03g00335 | 411 | Pfam | CBS domain | 255 | 299 | IPR000644 | - | |
| Cca03g00335 | 411 | SUPERFAMILY | CBS-domain pair | 30 | 227 | IPR046342 | - | |
| Cca03g00335 | 411 | Gene3D | - | 240 | 390 | IPR046342 | - | |
| Cca03g00335 | 411 | PANTHER | AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT | 7 | 411 | - | - | |
| Cca03g00335 | 411 | CDD | CBS_pair_SF | 255 | 384 | - | - | |
| Cca03g00335 | 411 | SUPERFAMILY | CBS-domain pair | 239 | 397 | IPR046342 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca03g00335 | Cca-Chr3 | 5243800 | 5247076 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca03g00335 | - | - | gmx:100780629 | 749.969 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca03g00335 | 03 | 5243800 | 5247076 | Cca03g00335 | 03 | 5243800 | 5247076 | ECH | |
| Cca11g01723 | 11 | 41752186 | 41755487 | Cca03g00335 | 03 | 5243800 | 5247076 | PCT |