Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01704 ATGGGTCTCCGCTTCTCCTCTCCGCCGCCGGAATCGCCGTCCACCTCCGCTTTGGCCGAGTTGCCCGAGAGCTGCGTGGCTCAGATCATGACCTACATGGACCCGCCCCAGATTTGCCAGCTGGCCACGCTCAACCGCGCCTTCCGCGCCGCCTCCTCCGCCGATTTCGTCTGGGAATCCAAGCTGCCGCCCAATTACCCCGCCCTTCTCCGCCGCATCTTCGCCGATTTCCCCTCCCATTTGGGCAAGAGGGGGATTTACGCCAGGCTTTGTCGCCTCAATTCTTTTGACCACGGCACCAAGAAAGTTTGGCTGGATCGAAGCTTGGGTAAGCTGTGTATGTGCGTTTCGGCCAAGGGACTCTCCATAACTGGAATTGATGATAGGAGATACTGGAACCATATCCCCACTGAGGAATCCAGATTCGGCAGTGTTGCATACCTCCAGCAAATCTGGTGGTTTGAAGTGGATGGGGAACTTGAGTTCCCATTTCCAGCTGGGAAATACAGCTTGTTCTTCAGATTACATCTAGGGCGAGCCTCCAAGAGGTTTGGAAGACGAGTCTGCAACACAGAGCATGTCCATGGGTGGGACATAAAGCCTGTGCGTTTCCAGCTATGGACTTCAGATGGGCAGTATGTTGCATCCCAGTGTTTTCTGGACGGACCTGGCAAATGGATCTATTACCATGCAGGGGATTTTGTTGTCGAGAATGGCAATGCATCAACAAAAGTTAAGTTCTCTATGACTCAAATTGATTGCACGCACACTAAAGGCGGTCTCTGTTTAGATTCTGTGCTCGTATATCCAAGTGAATTCAGAAAGGTTAAAGCATTTTTGAGTTACTCTTAA 852 0.5176 MGLRFSSPPPESPSTSALAELPESCVAQIMTYMDPPQICQLATLNRAFRAASSADFVWESKLPPNYPALLRRIFADFPSHLGKRGIYARLCRLNSFDHGTKKVWLDRSLGKLCMCVSAKGLSITGIDDRRYWNHIPTEESRFGSVAYLQQIWWFEVDGELEFPFPAGKYSLFFRLHLGRASKRFGRRVCNTEHVHGWDIKPVRFQLWTSDGQYVASQCFLDGPGKWIYYHAGDFVVENGNASTKVKFSMTQIDCTHTKGGLCLDSVLVYPSEFRKVKAFLSYS 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01704 283 Pfam Phloem protein 2 112 270 IPR025886 -
Cca11g01704 283 Gene3D - 16 70 - -
Cca11g01704 283 ProSiteProfiles F-box domain profile. 15 61 IPR001810 GO:0005515
Cca11g01704 283 PANTHER F-BOX PROTEIN PP2-A15 3 278 - -
Cca11g01704 283 SUPERFAMILY F-box domain 7 93 IPR036047 GO:0005515
Cca11g01704 283 PANTHER F-BOX PROTEIN PP2-A12 3 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01704 Cca-Chr11 41457345 41460030 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01704 - - gmx:100777716 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01704 11 41457345 41460030 Cca11g01704 11 41457345 41460030 ECH
Cca11g01704 11 41457345 41460030 Cca01g02185 01 49914047 49916344 ECH