Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02185 ATGGGTGGTAGTTTTTCTTCTTGTGTTTGTGATGGGGATGGCACCCCTTTGAGGCCTAGGCTTGGGGATATACCCGAGAGCTGTGTGGCATTGGTGTTAATGTATTTGGACCCACCAGATATTTGCAAGCTTGCTCGGTTGAACAGGGCGTTTCGTGATGCCTCGTTAGCGGACTTCATTTGGGAATCCAAGTTGCCTTTGAATTATAAGTTCATCATGGAGAAAGCTTTGAAGGATGCTTCTGTGGCAGAATTGGGGAAGAGGGATATTTATGCAAGACTCTGCATGCCCAATTTGTTTGACAATGGCACCAAGGAAATTTGGCTAGATAAGAGGACGGGTGGGATGTGTTTGGCGATTTCTTCACAGGCATTAAGGATTACAGGGATAGATGATCGGAGATATTGGAGTCGCATTTCGACCGAAGAGTCAAGATTCCATACAGTTGCTTATCTTCAACAAATTTGGTGGCTTGAAGTGGAAGGTGATGTTGATTTTCAATTTCCACCTGGAAAATACAGTGTGTTCTTTAGACTCCAGCTTGGAAGGTCGTCCAAGAGATTGGGTCGTCGAGTTTGTAAGACTGAGGACATTCATGGCTGGGACATAAAACCTGTGAAATTTCAGCTAACAACTTCTGATGGTCAACATGCTGTATCCCAAAGTCATTTGGATAATCTAGGCCATTGGGTTCTCTACCATGCAGGAAACTTTGTTTCTAAGAATCCTAATGATCTAATGAAGATCAAATTCTCATTAACTCAAATTGATTGCACGCATACTAAAGGTGGTTTATGTGTTGATTCTATATTTATATGTAACAGTGATGTAAAAAAAGAGGTGTAG 846 0.4196 MGGSFSSCVCDGDGTPLRPRLGDIPESCVALVLMYLDPPDICKLARLNRAFRDASLADFIWESKLPLNYKFIMEKALKDASVAELGKRDIYARLCMPNLFDNGTKEIWLDKRTGGMCLAISSQALRITGIDDRRYWSRISTEESRFHTVAYLQQIWWLEVEGDVDFQFPPGKYSVFFRLQLGRSSKRLGRRVCKTEDIHGWDIKPVKFQLTTSDGQHAVSQSHLDNLGHWVLYHAGNFVSKNPNDLMKIKFSLTQIDCTHTKGGLCVDSIFICNSDVKKEV 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02185 281 ProSiteProfiles F-box domain profile. 18 64 IPR001810 GO:0005515
Cca01g02185 281 PANTHER F-BOX PROTEIN PP2-A15 1 281 - -
Cca01g02185 281 SUPERFAMILY F-box domain 18 75 IPR036047 GO:0005515
Cca01g02185 281 PANTHER F-BOX PROTEIN PP2-A13 1 281 - -
Cca01g02185 281 Pfam Phloem protein 2 116 273 IPR025886 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02185 Cca-Chr1 49914047 49916344 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02185 - - gmx:100789493 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02185 01 49914047 49916344 Cca01g02185 01 49914047 49916344 ECH
Cca11g01704 11 41457345 41460030 Cca01g02185 01 49914047 49916344 ECH