Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01693 ATGGCCATCAATGTGGGGATTCTCGCTATCGACATCTACTTCCCTCCCACCTGTATTCAGCAGGAAGTACTGGAGGCTCATGATGGTGCCAGTAAAGGGAAATATACTATTGGACTTGGTCAGGATTGCATGGCCTTTTGCACAGAATTAGAAGATGTCATCTCGATGAGTTTGACAGTAGTTTCTTCCCTTCTTGAGAAGTATGGGATAGATCCTAAACAAATTGGTCGTCTGGAAGTAGGCAGTGAGACTGTGATTGACAAAAGCAAATCCATCAAGACTTTCCTCATGCAGATCTTTGAGAAATATGGGAATACTGATATCGAGGGCGTTGATTCAACCAATGCATGCTATGGAGGAACTGCTGCTTTATTCAATTGTGTTAATTGGGTGGAGAGCAACTCATGGGATGGACGCTATGGACTTGTTGTCTGCACTGACAGTGCTGTCTATGCTGAAGGACCTGCTCGGCCAACTGGTGGAGCTGCCGCGGTTGCCATGCTAATTGGTCCTAATGCTCCCATTGCTTTTGAAAGCAAATTGAGGGGAAGTCATATGGCTCATGCCTATGATTTTTACAAGCCTAATCTTGCCAGTGAATATCCAGTTGTTGATGGGAAACTTTCTCAAACTTGTTACCTTATGGCCCTTGATTCTTGCTATAATCACTTAAGTCACAAATATGAGAAACTAGAGGGAAAACAATTTTCTATTTCTGATGCTGAATACTTTGTATTTCACTCTCCATATAACAAGCTTGTACAGAAAAGTTTCGCTCGTTTGGTGTTCAATGACTTCATGAAAAATCCGAGTTCTGTGGATGAGGTTGCCAAAGAAAAGCTGGAACCTTTTGTAACATTATCCGGTGATGAGAGCTATCAAAGTCGGGATCTAGAAAAGGCATCCCAGCAAGTTGCAAAGCCTCAATACGATGCAAAGGTGCAACCAACCACTTTGGTACCAAAACAAGTTGGCAATATGTACACTGCATCTCTTTATGCAGCCTTTATTTCGCTTATTCACAACAAACATAGCACATTGGATGGTAAGAGGGTAATATTGTTCTCGTATGGAAGTGGCTTAACCTCCACAATGTTCTCTTTGCAATTACGTGAAGGTCAACATCCATTTAGCTTGTCAAACATTGTTGAAGTGATGGATGTTGCTGGAAAATTGAAGTCAAGGCATGAGTTTCCTCCAGAGAAATTTGTCGAAATCATGAAGCTAATGGAACATAGGTATGGTGGCAAGGAGTTTGTAACAAGCAAGGACACTAGCCTTCTATCTCCAGGCACATTCTATCTCACTGAAGTTGATTCCATGTATAGGAGATTCTATTCAAAGAAAACTAGTGAAAACGGTGTGACTCCTGCAAAAAATGGTTTCACTGCCAATGGTCACTGA 1404 0.4181 MAINVGILAIDIYFPPTCIQQEVLEAHDGASKGKYTIGLGQDCMAFCTELEDVISMSLTVVSSLLEKYGIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPNAPIAFESKLRGSHMAHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYNHLSHKYEKLEGKQFSISDAEYFVFHSPYNKLVQKSFARLVFNDFMKNPSSVDEVAKEKLEPFVTLSGDESYQSRDLEKASQQVAKPQYDAKVQPTTLVPKQVGNMYTASLYAAFISLIHNKHSTLDGKRVILFSYGSGLTSTMFSLQLREGQHPFSLSNIVEVMDVAGKLKSRHEFPPEKFVEIMKLMEHRYGGKEFVTSKDTSLLSPGTFYLTEVDSMYRRFYSKKTSENGVTPAKNGFTANGH 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01693 467 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 175 449 IPR013746 GO:0004421|GO:0006084|GO:0010142
Cca11g01693 467 SUPERFAMILY Thiolase-like 4 172 IPR016039 GO:0016746
Cca11g01693 467 SUPERFAMILY Thiolase-like 175 447 IPR016039 GO:0016746
Cca11g01693 467 CDD init_cond_enzymes 4 368 - -
Cca11g01693 467 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 449 - -
Cca11g01693 467 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 3 449 IPR010122 GO:0004421|GO:0008299
Cca11g01693 467 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 105 120 IPR000590 GO:0004421|GO:0008299
Cca11g01693 467 Gene3D - 2 451 IPR016039 GO:0016746
Cca11g01693 467 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 4 174 IPR013528 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01693 Cca-Chr11 41258886 41264059 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01693 K01641 - gmx:100780554 878.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01693 11 41258886 41264059 Cca11g01693 11 41258886 41264059 ECH
Cca11g01693 11 41258886 41264059 Cca06g01759 06 32875043 32882373 PCT