Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01686 ATGTTCACGGCTAGTAAACTAGCCTACATCACATTACCACCCCCTCCTCCATGCACTGCACCCTTCATTCCAATCTCTTCCTTGTCCTCTTCTTCTGCTGTTCACTTCATTCAGTTCAATGGCCGCCACTTATGCCTTCGCCGCAGGCTGTTTCTGCTTTCACCTAAGGCCACTGCAGATCAACAAGGCAAGGTTGAAGAATTTGAAGAGGATGCAGTTGTTGATAGTAAAATCCTTCCATATTGTAGCATAGACAAGAAAGAGAAGAAATCAATTGGTGAACTTGAGCAAGAATTTCTTCAAGCACTGCAAGCGTTCTATTATGAGGGAAAGGCTATCATGTCAAATGAAGAATTTGATAACCTCAAGGAAGAACTCATGTGGGAAGGAAGCAGCGTTGTCATGCTAAGTTCTGATGAGCAAAAATTTCTCGAAGCTTCTATGGCTTATGTGTCTGGAAACCCAATTATGAGTGACAAAGAGTATGATGAGTTGAAACTGAGGCTGAAGATGGAAGGGAGTGAAATTGTGGTTGAGGGTCCAAGGTGCAGTCTTCGTAGTAGAAAGGTACGTATTGTCCTGCTGAATGTCCCGGCTACTGTGATTGCATTAGGATTGTTCTTCTTCCTTGATGATCTGACTGGATTTGAGATCACATATCTTCTAGAGCTCCCGGAGCCTTTTAGTTTCATTTTCACTTGGTTTGCTGCTGTTCCACTCATTGTGTGGATAGCTCTCTCTCTAACAAATGCCATTGTAAAAGACTTTGTGATTTTAAAGGGTCCCTGTCCGAATTGTGGTACTGAAAATACCTCTTTCTTTGGGACTATACTTTCAATTTCAAGCGGTGGTTCCACCAACAGTGTCAAATGCTCTGACTGTGGCACTGAAATGAAGGAAGTAACGCCTAAGCGGAGGTATGCCCGAAAACCAGATATATTGTTCCAGCAACTCATGTTATCATTATCACACACAATTGGTGTCATCTCAACTGTTTGTGCCACCATCCTACTTATTTGGCCACCACAGACCAACTAA 1038 0.4287 MFTASKLAYITLPPPPPCTAPFIPISSLSSSSAVHFIQFNGRHLCLRRRLFLLSPKATADQQGKVEEFEEDAVVDSKILPYCSIDKKEKKSIGELEQEFLQALQAFYYEGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQKFLEASMAYVSGNPIMSDKEYDELKLRLKMEGSEIVVEGPRCSLRSRKVRIVLLNVPATVIALGLFFFLDDLTGFEITYLLELPEPFSFIFTWFAAVPLIVWIALSLTNAIVKDFVILKGPCPNCGTENTSFFGTILSISSGGSTNSVKCSDCGTEMKEVTPKRRYARKPDILFQQLMLSLSHTIGVISTVCATILLIWPPQTN 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01686 345 PANTHER PGR5-LIKE PROTEIN 1B, CHLOROPLASTIC 15 298 IPR039987 GO:0009535|GO:0009773|GO:0016730
Cca11g01686 345 PANTHER PGR5-LIKE PROTEIN 1A 15 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01686 Cca-Chr11 41141757 41146884 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01686 - - gmx:100784314 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01686 11 41141757 41146884 Cca11g01686 11 41141757 41146884 ECH
Cca11g01686 11 41141757 41146884 Cca06g01750 06 32789396 32792735 PCT