Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01750 ATGGCTAGCAAAATGGTCTTCACGCTCACAAGTCCATTCACTGCCCCTTCACCAACACTCTTCTCCTCCACTTCTGCTTCTCGACTCCACCTTCTTCAATTCACTGCCCGCCACTTCTGCCTTCGCCGCCGCTTATTTCTCTTTTCCCCCAAGGCCACTGCCGATCAAGGTCTTATCACTAACACCATGCATCTTCTTATTTCATACTACCACCTTTTAACTTTTTATTTTCTATATTTTCATGCAGGCAAGGTTGAGGAAGATGCTGTTGTTGATAGTAAAATCCTACCCTATTGTAGCATAGAAAAAAAAGATCAGAAGAAATCAATTGGTGAACTTGAGCAGGAATTTCTTCAAGCTCTTCAAGCATTCTATTACGAGGGGAAGGCTATTATGTCAAATGAGGAATTTGACAATCTTAAGGAAGAACTCATGTGGGAAGGGAGCAGCGTTGTGATGCTAAGTTCTGATGAGCAAAAATTTCTCGAAGCGTCTATGGCTTATGTGTCTGGAAAACCAATCATGAACGACCAAGAGTTTGATCAGTTGAAACTCAGGCTAAAGATGGAAGGGAGCGAAATTGTGGCTGAGGGTCCTCGGTGCAGTCTTCGTAGTAGAAAGGTATGTGTTAATATGTGTGttgattttatttttatttttttatttttgccttttccatttcttttcctATATTCTGTTAGGTTCTTCTTCTTTGATGAGTTGACTGGATTTGAGGTCTCATATTTTATAAAGATTCCAGAGCCTTTTAGTTTCATTTTAACTTGGTTTGCCGCTATTCCCTTTATTCTGTGGCTGGCTCAATCAATCACAAGGGCAATTGTAAACGATTCTTTGATTTTAAAGGGCCCTTGTCCTAACTGTGGTACTGAAAATACCTCTTTCTTTGGGACTATACTGTCGATTTCAAGTGGCAATTCCACCAACAATGTGAAATGTGAAAACTGTGAAACTAAAATGGTGTATGATTCAAAAACGAGATTGATTACATTACCAGAAGGAACATACGCAGAATCGTCCACCGGAAGAGATGAGTTATACGAGGATATTCTTAACATCAATCGATCTGGTCCAACCTAA 1098 0.3889 MASKMVFTLTSPFTAPSPTLFSSTSASRLHLLQFTARHFCLRRRLFLFSPKATADQGLITNTMHLLISYYHLLTFYFLYFHAGKVEEDAVVDSKILPYCSIEKKDQKKSIGELEQEFLQALQAFYYEGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQKFLEASMAYVSGKPIMNDQEFDQLKLRLKMEGSEIVAEGPRCSLRSRKVCVNMCVDFIFIFLFLPFPFLFLYSVRFFFFDELTGFEVSYFIKIPEPFSFILTWFAAIPFILWLAQSITRAIVNDSLILKGPCPNCGTENTSFFGTILSISSGNSTNNVKCENCETKMVYDSKTRLITLPEGTYAESSTGRDELYEDILNINRSGPT 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01750 365 PANTHER PGR5-LIKE PROTEIN 1A 1 57 - -
Cca06g01750 365 PANTHER PGR5-LIKE PROTEIN 1A 81 342 - -
Cca06g01750 365 PANTHER PGR5-LIKE PROTEIN 1B, CHLOROPLASTIC 81 342 IPR039987 GO:0009535|GO:0009773|GO:0016730
Cca06g01750 365 PANTHER PGR5-LIKE PROTEIN 1B, CHLOROPLASTIC 1 57 IPR039987 GO:0009535|GO:0009773|GO:0016730
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01750 Cca-Chr6 32789396 32792735 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01750 - - ccaj:109800982 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01750 06 32789396 32792735 Cca06g01750 06 32789396 32792735 ECH
Cca11g01686 11 41141757 41146884 Cca06g01750 06 32789396 32792735 PCT