Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01668 ATGGCTGATCTCTTTGCGTGGCTCATCTCCTTCTTCATCCTTATTGCCTTAATTGTACTCGTCATTTACCAGTTAATGTGCCTGGCAGACCTGGAATTTGATTATATAAATCCATATGATTCCGCATCTCGAATAAACAAAGTGGTATTGCCTGAATATATTACAGTAGGTGGCCTATGCTTGTTCTACATTGTAACAGGGCATTGGGTAATGTCATTGTTATGTGCTCCTTACCTGTACTACAATGTGAGATTATACAGACAACGAAATCATCTTGTTGATGTTACAGAGATATTCAACCAGCTCCCTAAGGAAAAGAAGCAACGGCTTTTCAAACTCTTCTATCTTGTTTTCATCCTTTTCCTATCCTTGTTTTGGATGATCTACACATCTTTGGATGACAATTATGATTGA 414 0.3792 MADLFAWLISFFILIALIVLVIYQLMCLADLEFDYINPYDSASRINKVVLPEYITVGGLCLFYIVTGHWVMSLLCAPYLYYNVRLYRQRNHLVDVTEIFNQLPKEKKQRLFKLFYLVFILFLSLFWMIYTSLDDNYD 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01668 137 SMART Cornichon_2 4 125 IPR003377 GO:0016192
Cca11g01668 137 Pfam Cornichon protein 5 125 IPR003377 GO:0016192
Cca11g01668 137 PANTHER CORNICHON-RELATED 1 135 - -
Cca11g01668 137 PANTHER CORNICHON FAMILY PROTEIN 1 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01668 Cca-Chr11 40745739 40749018 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01668 K20368 - gmx:100799061 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01668 11 40745739 40749018 Cca06g01732 06 32618645 32623043 PCT