Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01638 ATGTACTACAAGGGATGGTATCACTTTTTCTACCAATACAATCCGAATGGTGCAGTTTGGGGTGACATAGTTTGGGGACACGCGGTGTCAAGGGACATGATCCATTGGCTCCACCTTCCATTGGCAATGGTGGCTGATCAATGGTATGACAGGCAAGGAGTGTGGACAGGCTCTGCCACCATCTTACCCGATGGTAAAATCATCATGCTATACACAGGTTCCACCAACGAGTCTGTGCAAGTGCAAAACCTTGCATACCCTGCAGACCCCTCTGACCCTCTTCTTGTGGATTGGATCAAACACCCTGGGAACCCCGTTTTGGTCCCTCCACCAGGCATTGGTGCCAAGGACTTCCGTGACCCTACTACTGCATGGCTCACATCTGAAGGAAAGTGGCGCATCACCATAGGCTCCAAGCTCAACAAAACTGGCATTGCCTTGGTTTATGACACTGAGGACTTCAAGACCTATGAGCTCAAGGAGGGGTTGCTTCGTGCTGTTCCTAAAACTGGCATGTGGGAGTGTGTGGACTTCTTCCCTGTGTCTAAGAAGGCTGCAAATGGCTTAGATACCTCCTTTAATGGGGCTGAGGTGAAGCATGTGATGAAAGTGAGTTTGGATGATGATAGACATGATTACTATTCAATAGGGACTTATGATGAGAAGAAGGTTTTTTTCACACCAGATGATTCTAAGAATGATGTTGGTGTTGGATTGAGGTATGACTACGGTATATTCTATGCATCCAAGACGTTTTATGATCAGAGTAAGGAAAGGAGAGTTTTGTGGGGTTGGATTGGAGAATCTGACAGTGAATATGCTGATGTGGCCAAAGGTTGGGCATCTGTTCAGAGTATTCCAAGAACGGTGCAGCTTGATACAAAGACTGGCAGCAACTTACTTCAGTGGCCTGTTGCAGAGGTGGAGAGTTTGAGATTGAGAAATGATGAGTTCAAAAATTTGAAGGCTAAACCAGGGTCAGTGGTGTCACTGGATATTGAAACAGCCACACAGTTGGACATTGTTGCTGAGTTTGAGATAGACAAGGAATCCCTAGAGAAAACAACTGAATCCAACGAGAAGTACACGTGTAGCACTAGTGGTGGATCTAAACAACGTGGTGCCTTAGGACCTTTTGGTCTTTTGGTTTTGGCAGATGACGGGCTTTCTGAGTATACTCCTGTGTATTTTTATGTCACTAAAGGAAGCAACGGAACTCTTAAGACCTCCTTTTGCTCAGATCAATCAAGATCTTCTGTGGCAAATGATGTTCATAAGCAAATCTATGGGAGCATTGTTCCAGTACTTAAAGGCGAAAAGTTTTCCTTAAGAATACTGGTGGACCACTCTATTGTTGAAAGCTTTGCTCAAGGTGGAAGGACATGTGTGACATCTCGGGTTTATCCAACAAAGGCAATCTATGGAGCTGCTAGATTGTTCTTTTTCAACAATGCTACTGAGGCAACTGTGACAGCTTCATTCACAGTTTGGCAAATGAATTCTGCATTTATACGCCCATTCCACCCTGATCAGAAGAGTTAA 1542 0.4481 MYYKGWYHFFYQYNPNGAVWGDIVWGHAVSRDMIHWLHLPLAMVADQWYDRQGVWTGSATILPDGKIIMLYTGSTNESVQVQNLAYPADPSDPLLVDWIKHPGNPVLVPPPGIGAKDFRDPTTAWLTSEGKWRITIGSKLNKTGIALVYDTEDFKTYELKEGLLRAVPKTGMWECVDFFPVSKKAANGLDTSFNGAEVKHVMKVSLDDDRHDYYSIGTYDEKKVFFTPDDSKNDVGVGLRYDYGIFYASKTFYDQSKERRVLWGWIGESDSEYADVAKGWASVQSIPRTVQLDTKTGSNLLQWPVAEVESLRLRNDEFKNLKAKPGSVVSLDIETATQLDIVAEFEIDKESLEKTTESNEKYTCSTSGGSKQRGALGPFGLLVLADDGLSEYTPVYFYVTKGSNGTLKTSFCSDQSRSSVANDVHKQIYGSIVPVLKGEKFSLRILVDHSIVESFAQGGRTCVTSRVYPTKAIYGAARLFFFNNATEATVTASFTVWQMNSAFIRPFHPDQKS 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01638 513 Pfam Glycosyl hydrolases family 32 C terminal 307 498 IPR013189 -
Cca11g01638 513 Gene3D - 317 499 - -
Cca11g01638 513 Pfam Glycosyl hydrolases family 32 N-terminal domain 1 304 IPR013148 -
Cca11g01638 513 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 1 508 - -
Cca11g01638 513 Gene3D Glycosyl hydrolase domain; family 43 1 316 IPR023296 -
Cca11g01638 513 SMART glyco_32 1 459 IPR001362 GO:0004553|GO:0005975
Cca11g01638 513 SUPERFAMILY Concanavalin A-like lectins/glucanases 304 503 IPR013320 -
Cca11g01638 513 CDD GH32_Fruct1-like 1 292 - -
Cca11g01638 513 SUPERFAMILY Arabinanase/levansucrase/invertase 1 305 IPR023296 -
Cca11g01638 513 PANTHER ACID BETA-FRUCTOFURANOSIDASE 4, VACUOLAR 1 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01638 Cca-Chr11 40295850 40300514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01638 1 507 Glycoside Hydrolase AT1G12240 71.845 0.0 772
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01638 K01193 - gmx:100788844 980.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01638 11 40295850 40300514 Cca11g01638 11 40295850 40300514 ECH
Cca06g01715 06 32476263 32479408 Cca11g01638 11 40295850 40300514 PCT