Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01715 ATGGTGGCAGATCAATGGTATGATAAAAACGGTGTGTGGACTGGCTCTGCCACCATCTTACCCGATGGTCAAGTCATCATGTTATACACTGGTTCCACCAACGAGTCAGTGCAGGTGCAAAACCTTGCATACCCTGCAGACCCCTCTGATCCTCTCCTCGTTGATTGGATCAAATACCCTTCAAACCCTGTTCTGTTTCCACCACCAGGCATTGGTGCCAAAGATTTTCGTGACCCCACCACTGCTTGGCTCACCTCTCAAGGAAAGTGGCGCATAACCATTGGCTCTAAGCTCAACAAAACTGGCATTGCCTTAGTTTATGACACCATTGACTTCAAGACCTACGAGCGAGTGGAGGGGCTGCTTCATGCAGTGCCTGGCACTGGCATGTGGGAGTGTGTTGACTTTTTCCCTGTTTCTAACAAGAGTGAAAGTGGATTGGATACTTCAATCAATGGGGAGAATGTGAAGCATGTGGTCAAGGTTAGCTTGGATGATGATAGACATGATTACTATGCATTAGGGAGTTATGATGAGAAGAATGTTAAGTTCACACCAGATGACTCCAAGAACGATGTTGGTATTGGACTTAGATATGATTATGGTATATTTTATGCTTCCAAGACATTTTATGATCAGAGTAAGGGGAGAAGAGTGTTGTGGGGTTGGATTGGAGAATCTGATAGTGAATATGCTGATGTGGCCAAAGGTTGGGCTTCGGTTCAGGGTATTCCAAGAACAGTGACACTTGATCAGAAAACTGGTAGCAACTTACTTCAATGGCCTGTAGCGGAGGTGGAAAGTTTGAGATTGAGAAGCGATGAGTTTGAAAATTTAACTGTGAAGCCAGGGTCAGCGGTGCCACTAGAAATTGGAACAGCTGCTCAGTTGGACATTGTAGCTGAGTTTGAGATAGATAAGGAAGCCTTGGAGAAGACAGTTGAGTCCAATATGGAGTACAAGTGTAGCACCAGTGGTGGAGCAGCAGAACGTGGTGCATTAGGTCCTTTTGGTCTTCTAGTTTTGGCAGATGATGACCTTTCTGAATACACTCCCACATACTTTTATGTTGTCAAAGGAAGCGATGGTCATCTTAAAACTTTCTTCTGCTCCGATCAATCAAGGTCTTCTCTAGCAAATGATGTTGGTAAGAAAATCTTTGGAAGCTTTGTTCCAGTACTAAAAGACGAAAAGTTATCCGTAAGGATATTGGTGGACCATTCTATAGTTGAAAGCTTTGCTCAAGGTGGAAGGACGTGCGTGACATCTCGTGTTTATCCAACGAGGGCAATTTATGGAGCTGCTCGATTGTTCTTGTTCAATAATGCTACTGAGGGCACTGTGACTGCTTCACTAAAGGTTTGGCAAATGAATTCTGCATTCATACGACCATACCATCCCGACCAAAGGAATTAA 1416 0.4421 MVADQWYDKNGVWTGSATILPDGQVIMLYTGSTNESVQVQNLAYPADPSDPLLVDWIKYPSNPVLFPPPGIGAKDFRDPTTAWLTSQGKWRITIGSKLNKTGIALVYDTIDFKTYERVEGLLHAVPGTGMWECVDFFPVSNKSESGLDTSINGENVKHVVKVSLDDDRHDYYALGSYDEKNVKFTPDDSKNDVGIGLRYDYGIFYASKTFYDQSKGRRVLWGWIGESDSEYADVAKGWASVQGIPRTVTLDQKTGSNLLQWPVAEVESLRLRSDEFENLTVKPGSAVPLEIGTAAQLDIVAEFEIDKEALEKTVESNMEYKCSTSGGAAERGALGPFGLLVLADDDLSEYTPTYFYVVKGSDGHLKTFFCSDQSRSSLANDVGKKIFGSFVPVLKDEKLSVRILVDHSIVESFAQGGRTCVTSRVYPTRAIYGAARLFLFNNATEGTVTASLKVWQMNSAFIRPYHPDQRN 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01715 471 PANTHER ACID BETA-FRUCTOFURANOSIDASE 4, VACUOLAR 1 466 - -
Cca06g01715 471 SUPERFAMILY Arabinanase/levansucrase/invertase 2 263 IPR023296 -
Cca06g01715 471 Gene3D - 274 457 - -
Cca06g01715 471 Gene3D Glycosyl hydrolase domain; family 43 1 273 IPR023296 -
Cca06g01715 471 SMART glyco_32 1 417 IPR001362 GO:0004553|GO:0005975
Cca06g01715 471 Pfam Glycosyl hydrolases family 32 C terminal 265 456 IPR013189 -
Cca06g01715 471 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 1 466 - -
Cca06g01715 471 SUPERFAMILY Concanavalin A-like lectins/glucanases 262 461 IPR013320 -
Cca06g01715 471 CDD GH32_Fruct1-like 1 250 - -
Cca06g01715 471 Pfam Glycosyl hydrolases family 32 N-terminal domain 1 262 IPR013148 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01715 Cca-Chr6 32476263 32479408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01715 1 465 Glycoside Hydrolase AT1G12240 70.402 0.0 693
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01715 K01193 - gmx:100798772 893.264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01715 06 32476263 32479408 Cca06g01715 06 32476263 32479408 ECH
Cca06g01715 06 32476263 32479408 Cca11g01638 11 40295850 40300514 PCT