Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01631 ATGCGAGTGAAGGAAATGCACCCATTGTGCTGCATCTCGCTGGAGAGTCCGGGGATCGGGAGCGACTCGCCGGAGCCAGAGGCGGCCGCGCTTTCCAGGACGAGGAGTCTTCCGGCGGGCGGATCTGACGGCATTGCGCGCCGGGGATCGGAGGCCACGGTGGCCGGCGTGCTCTACAAGTGGACTAATTACGGCAAAGGATGGAGATCCCGCTGGTTCCTCCTCCGCAATGGCGTCCTCTCCTACGCCAAGCTCCGGTGGCCGGAGAATCTCAACCTCCTATCTACCGTCGACGACGTCCGCCTCATCGGAGAGGTCACCGCCAATCGCCTCGCCAGAGACGCCGCCGCGGCCACCATGCGTCGGAAGAATCACAAACCTCCTTCCTCCTCTTCGTCTGCCGTTGTCCATCTCAAGATCTCGTCATTTAGAGAGAGCAAGTCAGACGATAGAAGGTTCTATATATTCACAGCAACAAAGACTCTCCACCTGAGAACCGATTCAAGGAAGGACCGTGTGGCGTGGATCCAAGCCTTGATTTCAACTCGTGGATTGTATCCACTTCGACCACTGAGTGACCATCTTTCCCTCGCACCAAATCATATATCTGTTTCAACTGAGAGGCTCAAGAAGCGCTTGATTGAAGAGGGTAGTAGCGAGAGCCTTATCAAGGAGTGTGAGCAAATCATGCTCACCGAGTTCTCCAAATTACAAGAGCAACTTCAGATCCTATGTCAAGAACGAACGAACTTGCTAGATACAATAAGACAGCTGGAGGCTGCTAACATTGAACCTGAGGCCTCTGCCTTGCATGACAGTGAATACCAATTAACAAAGAATGGATTTTCAAGTCTAGGACGTGGGAAATATAGTGAATGCAGTACTACTGAATCATCTGATGATATTGAGAAACAGGAGATGGAGGAAGTGTCAGAGGAAGATGAAATCTCATATTATGACACTAAAGAGTATTTTACAGAACTTGGTTCTAGGTGTGGGTCAACAGGAGCTTTGGATCCAATGAATATGTCTGGAGAAGCTAACACACAATGCATTAATTTGGAGAACAGTCTTGTTGAGAAGACAATCAATGATTTTGGCTACCCTCAGATAGAAAGGCGAAAGAAGCTTCCAGATCCTGTTGAGAAAGAGAAGGGCGTTAGTCTTTGGTCAATTATCAAAGACAATGTGGGCAAAGATCTCACCCGAGTGTGTCTACCTGTATACTTTAATGAGCCAATATCATCTCTTCAGAAATGTTTTGAGGACTTGGAGTACTCTTTTCTACTGGATCGAGCTTATGAGTATGGAAAATCAGGAAACAGTCTCCTTCGGGCACTGCATGTTGCGGCTTTTGCAGTTTCTGGATATGCATCATCTGAAGGTCGTCATTGTAAACCCTTTAATCCACTGTTAGGGGAAACATACGAAGCTGATTATCCAGACAAAGGAGTCCGATTTTTTTCTGAGAAGGTGAGTCACCATCCAACCGTCGTTGCCTGCCACTGTGAAGGTAGAGGATGGAAGTTTTGGGCCGACAGTAACATTCGGTCAAAGTTTTGGGGAAGGTCAATTCAGCTTGACCCAGTTGGGGTTCTTACCCTAGAGTTTGATGATGGGGAAATATTTCAGTGGAGTAAGGTCACGACTACAATTTATAATCTTATCCTTGGCAAAATATATTGTGACCATCATGGGAACATGGAAATCCGTGGTAATCGCCAATATTCGTGCAGAGTCAAGTTCAAAGAACAGGCGCTTCTTGATCGAAATCCTCACCAGGTGCATGGCTTTGTTGAAGATGTAACGGGAAAAAAGGTTGCCACATTATTTGGCAAGTGGGATGACAGCATGTATTATGTTAATGGTGAAGTGCATGTGAAGCCAAAAGATTTCACTTTGTCAGACACAAACTTGTTATGGAAAAGGGCTAAGCCACCATCTAATCTCACCCGTTACAATTTGACATCATTTGCCATCACTTTGAATGAGCTTACTCCGGGCCTAAAGGAGAAGCTTCCGCCCACGGATTCCAGGCTGAGACCGGATCAGCGGCATCTAGAGAATGGGGAATACGAGAAGGCTAATATGGAAAAACAAAGGTTGGAAAAGAGGCAAAGAATGTCAAGGAAAATGCAAGAAAATGGATGGCAGCCTCGGTGGTTCCACAGAGAAGGTGAAAATGGAACGTTTCGATACATTGGCGGGTATTGGGAAACGAGAGCTCAAGGAAGATGGAATGGATGCCCAAATATCTTCGGTGAAATTAATGAAGGCAATTTTGATCCTTTAGCTGCATCATAA 2304 0.467 MRVKEMHPLCCISLESPGIGSDSPEPEAAALSRTRSLPAGGSDGIARRGSEATVAGVLYKWTNYGKGWRSRWFLLRNGVLSYAKLRWPENLNLLSTVDDVRLIGEVTANRLARDAAAATMRRKNHKPPSSSSSAVVHLKISSFRESKSDDRRFYIFTATKTLHLRTDSRKDRVAWIQALISTRGLYPLRPLSDHLSLAPNHISVSTERLKKRLIEEGSSESLIKECEQIMLTEFSKLQEQLQILCQERTNLLDTIRQLEAANIEPEASALHDSEYQLTKNGFSSLGRGKYSECSTTESSDDIEKQEMEEVSEEDEISYYDTKEYFTELGSRCGSTGALDPMNMSGEANTQCINLENSLVEKTINDFGYPQIERRKKLPDPVEKEKGVSLWSIIKDNVGKDLTRVCLPVYFNEPISSLQKCFEDLEYSFLLDRAYEYGKSGNSLLRALHVAAFAVSGYASSEGRHCKPFNPLLGETYEADYPDKGVRFFSEKVSHHPTVVACHCEGRGWKFWADSNIRSKFWGRSIQLDPVGVLTLEFDDGEIFQWSKVTTTIYNLILGKIYCDHHGNMEIRGNRQYSCRVKFKEQALLDRNPHQVHGFVEDVTGKKVATLFGKWDDSMYYVNGEVHVKPKDFTLSDTNLLWKRAKPPSNLTRYNLTSFAITLNELTPGLKEKLPPTDSRLRPDQRHLENGEYEKANMEKQRLEKRQRMSRKMQENGWQPRWFHREGENGTFRYIGGYWETRAQGRWNGCPNIFGEINEGNFDPLAAS 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01631 767 ProSiteProfiles PH domain profile. 51 184 IPR001849 -
Cca11g01631 767 MobiDBLite consensus disorder prediction 288 311 - -
Cca11g01631 767 MobiDBLite consensus disorder prediction 15 45 - -
Cca11g01631 767 SUPERFAMILY PH domain-like 51 181 - -
Cca11g01631 767 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 4 758 IPR000648 GO:0008289
Cca11g01631 767 Pfam Oxysterol-binding protein 388 741 IPR000648 GO:0008289
Cca11g01631 767 Gene3D - 48 184 IPR011993 -
Cca11g01631 767 Coils Coil 685 714 - -
Cca11g01631 767 Gene3D - 684 743 - -
Cca11g01631 767 SMART PH_update 52 186 IPR001849 -
Cca11g01631 767 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A 4 758 - -
Cca11g01631 767 Coils Coil 241 261 - -
Cca11g01631 767 Pfam Pleckstrin homology domain 56 180 - -
Cca11g01631 767 SUPERFAMILY Oxysterol-binding protein-like 383 761 IPR037239 -
Cca11g01631 767 Gene3D - 474 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01631 Cca-Chr11 40132023 40148442 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01631 K20456 - gmx:100793692 1457.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01631 11 40132023 40148442 Cca11g01631 11 40132023 40148442 ECH
Cca06g01708 06 32364636 32374905 Cca11g01631 11 40132023 40148442 PCT