Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01708 ATGCGAGTGAAAGAGATGCACCCACTGTGCTGTATCTCCCTCGAGAGTCCCGGAATCGGCAACCATTCGCCGGAGCGCGAGGCGGCGCCGGCCGCGATTTCCCCAACCAGGAGCCTCCCGGTGGCGGCCTCCTACGGCAATGCCGCTCAGGGATCGGAGACCACCGTCGCCGGCGTTCTCTACAAGTGGACCAATTACGGCAAAGGCTGGAGATCCAGGTGGTTCCTCCTGCGGAACGGCGTCCTCTCGTACGCCAAGATCCGCTGTCCGGAGAATCTCATCCTCCTCACTCCTTCCGACGACGTTCGCCTCATCGGAGAGGTTTCCACCAGCCGCCTCGCACGTAAGAACAGCGCCACCACCGTCACGCGACGGAAGCACCGCAAAGcttcttcttcttcttcttcttcttcCGGCGTTGTCCATCTCAAGCAGATTTCGTCATTCAGAGAGAGCAAATCAGATGATCGGCGTTTCTATATATTTACAGCAACAAAGACGCTCCATCTGAGAACTGATTCTAGGAAAGATAGGGTGTCTTGGATACACGCGTTGGTATCAACACGTGGCCTGTATCCTCTTCAACCACTCAATGATCATCTCTTGCTTGCACCCAATGACATATCAATGTCAACGGAGCGTCTTAAGACACGCTTGCTCGAAGAGGGTACCAGTGAGAACCTTGTGAAGGAGTGCGAACAAATCATGCTCTCAGAGTTATCCGAAATGCAAGGACAACTTGAAGTTCTTTGTCAAGAGCGATCTAATTTGCTTGACACAATAAGGCAGTTGGAGGCAGCTAATACTGAACCTGAGGCCTCTGCAATACACGATGGTGAATACCAGTTAACAAAGAATGAGTTTTCAAGTCTTAGGCGCGGAAAATATAGTGAATGTAGTACAACTGAATCATCTGATGATATTGAGAAACAAGAGATGGAAGAAGTGTCAGACGAAGATGAAATCTCATATTATGATACGAGAGAGTGTTTTCCAGAGCCTGATTGCAAGTGTGACTCTGCAGGAGCTATGAAGCAAGTTGACAGGTGCAGGGAAGCCAACTCACAGTGCATTGATACAGAGATCATTCATCCGGAGAAAATGATCTGTAATTATAAGCACCCTCACATTGCAAGGCGAAGGAAACTTCCAGATCCTGTTGAGAAAGAGAAGGGTGTTAGTCTTTGGTCAATGATCAAGGACAACGTGGGAAAAGATCTCACGAGAGTTTGTCTCCCGGTATACTTTAATGAGCCGATATCATCCTTACAAAAATGTTGTGAGGACTTGGAGTACTCTTATCTTCTGGATCAAGCTTATGAGTACGGAAAATCAGGAAACAATCTCCTTCGGGCACTGTATGTTGCTGCCTTTGCAGTTTCTGGATATGCGTCATCTGAAGGTCGTAATTGTAAACCCTTTAATCCTTTACTAGGAGAAACCTACGAGGCTGATTACCCCGAGAAAGGAATTCGCTTCTTTTCTGAGAAGGTTAGTCACCATCCAACTCTCATTGCCTGCCACTGCGAAGGTAGAGGATGGAAGTTTTGGGCTGACAGCAACATCCATTCAAAGTTTTGGGGAAGGTCAATTCAGCTTGACCCCGTGGGTGTTCTGACCCTAGAGTTCAATGATGGTGAAATATTTCAGTGGAGCAAGGTCACCACCACGATCTATAATCTTATCCTTGGGAAAATATACTGTGATCATCATGGGAACATGGATATACGTGGTAATCGTAAATATTCATGCAGACTCAAGTTCAAAGAGCAGACGATCCTCGACCGAAATCCTCGTCAGGTGCATGGATTTGTCGAAGATGCAACGGGTAAAAAAGTAGCCACATTATTTGGCAAATGGGATGATAGCATGTATTATATGAGTGGTAATGTGAATGTTAAGCCTAAAGATTTCTCTTCATCAAACGCATCCTTGTTGTGGAAAAGGACTATGCCATCTCCTAATCTCACCCGGTATAATTTGACACCATTTGCCATCACTCTGAATGAGCTTACTCCGGGACTGAAGGAGAAGCTCCCGCCCACAGATTCCAGGCTCAGACCAGATCAACGGCATCTAGAGAATGGGGAATACGAGAAGGCTAATTTCGAGAAACAAAGGTTGGAAAAGCGACAGAGAATGTCGAGGAAAATACAAGAAAATGGTTGGAAGCCTAGGTGGTTCCGAAGAGAAGGTGAAAATGGAACATTTCGATACGTTGGTGGGTATTGGGAAGCAAAAGACCTTGGAAGATGGGACGGGTGCCCTAATATATTTGGTGAAATTAATGAAGACTCTGTCGATCGGTTAGGTGCATTTTAA 2322 0.4621 MRVKEMHPLCCISLESPGIGNHSPEREAAPAAISPTRSLPVAASYGNAAQGSETTVAGVLYKWTNYGKGWRSRWFLLRNGVLSYAKIRCPENLILLTPSDDVRLIGEVSTSRLARKNSATTVTRRKHRKASSSSSSSSGVVHLKQISSFRESKSDDRRFYIFTATKTLHLRTDSRKDRVSWIHALVSTRGLYPLQPLNDHLLLAPNDISMSTERLKTRLLEEGTSENLVKECEQIMLSELSEMQGQLEVLCQERSNLLDTIRQLEAANTEPEASAIHDGEYQLTKNEFSSLRRGKYSECSTTESSDDIEKQEMEEVSDEDEISYYDTRECFPEPDCKCDSAGAMKQVDRCREANSQCIDTEIIHPEKMICNYKHPHIARRRKLPDPVEKEKGVSLWSMIKDNVGKDLTRVCLPVYFNEPISSLQKCCEDLEYSYLLDQAYEYGKSGNNLLRALYVAAFAVSGYASSEGRNCKPFNPLLGETYEADYPEKGIRFFSEKVSHHPTLIACHCEGRGWKFWADSNIHSKFWGRSIQLDPVGVLTLEFNDGEIFQWSKVTTTIYNLILGKIYCDHHGNMDIRGNRKYSCRLKFKEQTILDRNPRQVHGFVEDATGKKVATLFGKWDDSMYYMSGNVNVKPKDFSSSNASLLWKRTMPSPNLTRYNLTPFAITLNELTPGLKEKLPPTDSRLRPDQRHLENGEYEKANFEKQRLEKRQRMSRKIQENGWKPRWFRREGENGTFRYVGGYWEAKDLGRWDGCPNIFGEINEDSVDRLGAF 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01708 773 Gene3D - 690 748 - -
Cca06g01708 773 SMART PH_update 54 192 IPR001849 -
Cca06g01708 773 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A 4 344 - -
Cca06g01708 773 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A 370 764 - -
Cca06g01708 773 MobiDBLite consensus disorder prediction 116 137 - -
Cca06g01708 773 Coils Coil 247 267 - -
Cca06g01708 773 Pfam Pleckstrin homology domain 58 185 - -
Cca06g01708 773 MobiDBLite consensus disorder prediction 300 319 - -
Cca06g01708 773 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 370 764 IPR000648 GO:0008289
Cca06g01708 773 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 4 344 IPR000648 GO:0008289
Cca06g01708 773 SUPERFAMILY Oxysterol-binding protein-like 389 764 IPR037239 -
Cca06g01708 773 SUPERFAMILY PH domain-like 52 187 - -
Cca06g01708 773 Gene3D - 49 190 IPR011993 -
Cca06g01708 773 Gene3D - 480 650 - -
Cca06g01708 773 Pfam Oxysterol-binding protein 394 747 IPR000648 GO:0008289
Cca06g01708 773 ProSiteProfiles PH domain profile. 53 190 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01708 Cca-Chr6 32364636 32374905 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01708 K20456 - gmx:100819924 1477.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01708 06 32364636 32374905 Cca06g01708 06 32364636 32374905 ECH
Cca06g01708 06 32364636 32374905 Cca11g01631 11 40132023 40148442 PCT