Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01610 ATGGCCATGGCCATAGTGGAAAGTGGAAACTTCGTACCCTTTGCCTCGCTGTCACTGACTCACTCTCCAGTCTCCTCATCCTTTATAAGCTCTCGCTCCTGCTCCTTCAACAAATTCAAAAACACTCTCTGCTTTCAACTTCAATACTCTGTTTCCCTTGCATGCACTGCACATAATCAAGTGATTTCTTTCAATATGTGGCTGTTGCTCTTGTTCACTATGCTCTCTTTTCCACACCCTTCATGCCAAATGCTACTCTTGCCCCTAACCCACACTCTTTcccaagcccaagcccaagcccaagcccaaTTCAACGCCACTCACCACCTCTTGAAATCCACCTCCACCCGTTCCGCGGCCCGTTTCCGGCGCCAACTCTCCCTCCCCCTCTCCCCGGGCAGCGACTACACACTCTCCTTCAACCTGGGCCGGCAGGCCCAGCCCATAACACTCTACATGGACACCGGCAGCGACCTAGTCTGGTTCCCCTGCGCCCCTTTTAAATGCATCCTCTGCGAGGGAAAGCCCAACGAGCCCAACGCCTCTCCCCCCACCAACATCACCCGAAGCGTCGCCGTTTCATGCAAGTCCCCCGCATGCGCCGCAGCGCACAACGCCGCCTCCACCTCCGATCTCTGCACCATGGCTCGTTGTCCTCTCGAATCCATCGAAACCTCCGATTGCGCCTCTTTCAAGTGTCCACCGTTTTACTACGCCTACGGCGACGGAAGCTTAATCGCGCGTCTCTATCATGACACGCTTTCCCTCTCCTCGTTGTTTCTCACTAACTTCACCTTCGGTTGCGCTCACACCACGCTCGCCGAACCTACCGGCGTCGCCGGCTTCGGCCGCGGATTACTCTCTCTCCCCGCTCAGCTAGCTACGCTCTCTCCTCAACTCGGAAACCGCTTCTCCTATTGTTTAGTCTCTCACTCGTTCGACTCGGAGCGGGTTCGGAAACCGAGTCCACTCATCCTCGGCCGTTACCACGAGAAGGATAAGAATATTCGCGGTGGCGATGAAGTGGTTGAGTTTGTGTACACGCCTATGCTTGAAAACCCTAAGCATCCTTACTTCTACTGCGTTGGCTTAACCGGAATATCCGTCGGGAAGAGGATTATTCCGGCGCCGGAGATTCTGCGGCGGGTGAACGCGCGAGGCGACGGCGGCGTTGTGGTGGACTCCGGCACGACTTTCACGATGTTGCCGGCGGGATTCTACAACTCGGTGGTGGCGGAGTTCGAGCGGCGAGTGGGGCGAGTGAACTCGCGCGCGCGTGGGGTGGAGGAGAGAACGGGACTGGCGCCGTGTTATTATTTAAAAGCGGGGGCGGAGGTGCCACGCGTTACGCTGCGTTTCGCGGGGGCGAATTCGAGTGTGGTGCTGCCCAGGAAGAACTATTTCTACGAGTTTTTGGAGGGTGGTGATGGGGCGAGGAGGAGGGTGGGGTGTCTGATGATGATGAACGGTGGAGATGAGAGTGAGTTGAGCGGTGGGCCCGGGGCCACGCTCGGGAATTACCAGCAGCAGGGGTTTGAGGTTGAGTATGACTTGGAAGCCAAGCGCGTGGGGTTCGCTAAGAGGCAGTGCGCGTCTCTTTGGGAGAGACTCAATCGCGACAAAAACTAG 1629 0.5574 MAMAIVESGNFVPFASLSLTHSPVSSSFISSRSCSFNKFKNTLCFQLQYSVSLACTAHNQVISFNMWLLLLFTMLSFPHPSCQMLLLPLTHTLSQAQAQAQAQFNATHHLLKSTSTRSAARFRRQLSLPLSPGSDYTLSFNLGRQAQPITLYMDTGSDLVWFPCAPFKCILCEGKPNEPNASPPTNITRSVAVSCKSPACAAAHNAASTSDLCTMARCPLESIETSDCASFKCPPFYYAYGDGSLIARLYHDTLSLSSLFLTNFTFGCAHTTLAEPTGVAGFGRGLLSLPAQLATLSPQLGNRFSYCLVSHSFDSERVRKPSPLILGRYHEKDKNIRGGDEVVEFVYTPMLENPKHPYFYCVGLTGISVGKRIIPAPEILRRVNARGDGGVVVDSGTTFTMLPAGFYNSVVAEFERRVGRVNSRARGVEERTGLAPCYYLKAGAEVPRVTLRFAGANSSVVLPRKNYFYEFLEGGDGARRRVGCLMMMNGGDESELSGGPGATLGNYQQQGFEVEYDLEAKRVGFAKRQCASLWERLNRDKN 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01610 542 Pfam Xylanase inhibitor N-terminal 136 327 IPR032861 -
Cca11g01610 542 PANTHER BNAA01G17170D PROTEIN 67 535 - -
Cca11g01610 542 Pfam Xylanase inhibitor C-terminal 360 526 IPR032799 -
Cca11g01610 542 CDD pepsin_A_like_plant 136 530 IPR034161 -
Cca11g01610 542 Gene3D Acid Proteases 127 327 IPR021109 -
Cca11g01610 542 Gene3D Acid Proteases 339 535 IPR021109 -
Cca11g01610 542 ProSiteProfiles Peptidase family A1 domain profile. 136 526 IPR033121 -
Cca11g01610 542 SUPERFAMILY Acid proteases 131 535 IPR021109 -
Cca11g01610 542 PANTHER OS07G0603500 PROTEIN-RELATED 67 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01610 Cca-Chr11 39848480 39851266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01610 107 533 Miscellaneous Gene Families AT1G77480 24.130 1.36e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01610 - - gmx:100805699 785.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01610 11 39848480 39851266 Cca11g01610 11 39848480 39851266 ECH
Cca06g01702 06 32301022 32302017 Cca11g01610 11 39848480 39851266 PCT