Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01702 ATGCACCCCCACGACCTCTGCGCCATCGCACGTTGTCCCTTGGACAGAATCGAAACCTCCGACTGCTCCTCCGCCACGTGTCCACCTTTCTACTACGCCTACGCCGACCGAAGCTTCGTGGCGcagctccaccgccacaccctctccatctcctctctctccctcAAAAACTTCACCTTTGCCTGCGCCCACACCGCACTCGCCGAACCCACCGGCGTGGCGGGTTTCGGTCGAGGCTTATTATCCCTCCCCGCGCAGCTTTCAACGCTTTCTCCCAACCTCGGTAACACCTTTTCTTATTGCTTAATTTCCCACTCCTTCCAACGAGTTCCCACGCCGAGTCCACTCATTCTTGGCCACTACGATGATTTTAACCACCGCGGGGAATTCGTTTACACGCCCATGATTCCCAACCCTAAGCATCCTTACTTCTACTGCGTCGGACTCGCCGGGATTTCCGTCGGGGAGACGAATATTCCGGCGCCGGAGATGCTCCGGCGAGTGGACCGCCGCGGGAACGGCGGCGTGGTGGTGGACAGCGGGACCACTTTCACGATGCTGCCGGCGAGTTTGTATGGGTCGGTGGCGGGTGAGTTGGAGCGGCGAGTGGGGCGAGTTGCGAAGCGCGCGAGTGAGGTGGAGGAGAAAACGGGCCTCGGGCAGTGTTATTTTTTGGAGGGGTTGGTGGAGGTGCCTAAGGTGACGTTGCACTTTGTGGGGAATGGGAGTTATTCCAGTGTGGTGCTGCCTAGGAGGAACTATTTTTACGAGTTTTTGTACGGTGGAGATGGGGTTGAGAGGAAGGTGGGGTGTATGATGCTGATGAACGGCGGTGATGACGCTGACTTGAGCGGTGGGCCCGGGGCTGTACTTGGGAACTATCAGCAGCAGGGGTTTGAGGTCGTCTATGACTTGGAAAACCAGCGCGTGGGCTTTGCTAAAAGGCAATGCGCGTCGCTTTGGGATAGCCTCAACCGTCACAAGATTGAAAGCTAG 996 0.5512 MHPHDLCAIARCPLDRIETSDCSSATCPPFYYAYADRSFVAQLHRHTLSISSLSLKNFTFACAHTALAEPTGVAGFGRGLLSLPAQLSTLSPNLGNTFSYCLISHSFQRVPTPSPLILGHYDDFNHRGEFVYTPMIPNPKHPYFYCVGLAGISVGETNIPAPEMLRRVDRRGNGGVVVDSGTTFTMLPASLYGSVAGELERRVGRVAKRASEVEEKTGLGQCYFLEGLVEVPKVTLHFVGNGSYSSVVLPRRNYFYEFLYGGDGVERKVGCMMLMNGGDDADLSGGPGAVLGNYQQQGFEVVYDLENQRVGFAKRQCASLWDSLNRHKIES 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01702 331 SUPERFAMILY Acid proteases 7 322 IPR021109 -
Cca06g01702 331 Coils Coil 196 216 - -
Cca06g01702 331 ProSiteProfiles Peptidase family A1 domain profile. 1 313 IPR033121 -
Cca06g01702 331 PANTHER ASPARTYL PROTEASES 3 326 IPR001461 GO:0004190|GO:0006508
Cca06g01702 331 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 3 326 - -
Cca06g01702 331 Pfam Xylanase inhibitor C-terminal 145 313 IPR032799 -
Cca06g01702 331 Pfam Xylanase inhibitor N-terminal 7 119 IPR032861 -
Cca06g01702 331 Gene3D Acid Proteases 3 119 IPR021109 -
Cca06g01702 331 CDD pepsin_A_like_plant 27 317 IPR034161 -
Cca06g01702 331 Gene3D Acid Proteases 121 323 IPR021109 -
Cca06g01702 331 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 176 187 IPR001969 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01702 Cca-Chr6 32301022 32302017 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01702 - - ccaj:109800543 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01702 06 32301022 32302017 Cca06g01702 06 32301022 32302017 ECH
Cca06g01702 06 32301022 32302017 Cca11g01610 11 39848480 39851266 PCT