Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01528 atgaatgatcagaaaggaagagaagGTGAAAGTGTTGTTGGTCGGAAGCGAATCAAGGATAAGCAACAACCCTGTCCTTCCTCCACAAGGCCAAACAACCCACACCGTCGCTGTGCTTCTCTCCCTAACGCTCAATACGAAGAGGAATCTGAAACAGACATTGAGGGATCAGATGTTAGTGGTTCAGAAGGGGAGGACACGTCTTGGATCTCATGGTTTTGCAATTTGAGAGGAAATGAATTCTTTTGCGAGGTTGATGATGATTTCATACAAGATGATTTCAACCTCTGTGGATTAAGTAGTCAAGTGCCTTACTATGATTATGCACTTGATTTAATTTTGGATGTTGAGCCCTCCCACGGAGACATGTTCACGGAGGAGCAAAATGAGTTAATTGAATCTGCAGCAGAGATGCTTTATGGTCTGATTCATGCCCGTTACATTTTGACAAGCAAGGGAATGGCTGCAATGCTGCACAAGTACAAGAACTACGACTTTGGCAGATGTCCGAGAGTTTACTGCTCTGGACAACCCTGCCTTCCTGTTGGCCAGTCAGATGTTCCTAGGTCAAGTACTGTAAAAATATATTGCCCCAAGTGTGAAGACATTTGCTACCCAAAGTCCAAGTATCAAGGTAACATTGATGGGGCTTATTTTGGAGCTACATTTCCTCACCTCTTTCTGATGACTTATGGGAATCTGAAGCCACAAAAGCCATCACAGAACTATGTGCCCAGAGTTTTTGGTTTCAAAGTTCACAAGCCATGA 768 0.4245 MNDQKGREGESVVGRKRIKDKQQPCPSSTRPNNPHRRCASLPNAQYEEESETDIEGSDVSGSEGEDTSWISWFCNLRGNEFFCEVDDDFIQDDFNLCGLSSQVPYYDYALDLILDVEPSHGDMFTEEQNELIESAAEMLYGLIHARYILTSKGMAAMLHKYKNYDFGRCPRVYCSGQPCLPVGQSDVPRSSTVKIYCPKCEDICYPKSKYQGNIDGAYFGATFPHLFLMTYGNLKPQKPSQNYVPRVFGFKVHKP 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01528 255 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 61 165 IPR016149 GO:0005956|GO:0019887
Cca11g01528 255 PRINTS Casein kinase II regulatory subunit family signature 68 84 IPR000704 GO:0005956|GO:0019887
Cca11g01528 255 PRINTS Casein kinase II regulatory subunit family signature 85 99 IPR000704 GO:0005956|GO:0019887
Cca11g01528 255 PRINTS Casein kinase II regulatory subunit family signature 140 161 IPR000704 GO:0005956|GO:0019887
Cca11g01528 255 PRINTS Casein kinase II regulatory subunit family signature 165 186 IPR000704 GO:0005956|GO:0019887
Cca11g01528 255 PRINTS Casein kinase II regulatory subunit family signature 187 208 IPR000704 GO:0005956|GO:0019887
Cca11g01528 255 PRINTS Casein kinase II regulatory subunit family signature 215 232 IPR000704 GO:0005956|GO:0019887
Cca11g01528 255 PANTHER CASEIN KINASE II SUBUNIT BETA 42 254 IPR000704 GO:0005956|GO:0019887
Cca11g01528 255 MobiDBLite consensus disorder prediction 24 39 - -
Cca11g01528 255 ProSitePatterns Casein kinase II regulatory subunit signature. 169 200 IPR000704 GO:0005956|GO:0019887
Cca11g01528 255 SUPERFAMILY Casein kinase II beta subunit 66 254 IPR035991 GO:0005956|GO:0019887
Cca11g01528 255 MobiDBLite consensus disorder prediction 1 63 - -
Cca11g01528 255 PANTHER CASEIN KINASE II SUBUNIT BETA 42 254 - -
Cca11g01528 255 Gene3D - 166 240 - -
Cca11g01528 255 SMART CK_II_beta_2 68 251 IPR000704 GO:0005956|GO:0019887
Cca11g01528 255 Pfam Casein kinase II regulatory subunit 68 251 IPR000704 GO:0005956|GO:0019887
Cca11g01528 255 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01528 Cca-Chr11 38415176 38418889 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01528 K03115 - gmx:100789357 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01528 11 38415176 38418889 Cca11g01528 11 38415176 38418889 ECH
Cca11g01528 11 38415176 38418889 Cca06g01641 06 31646313 31649323 PCT