Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01641 ATGTACAGAGAGCGAGGAGGCGTTGGATCCAAATCGGAGGTAACTTCCGTCGATCGGAAGCGAATCAACGACGTCCTCGATAAACAGCTCGAACGATCCTCGCCGTCCACGTCGCGAACCGCCGCCATCAACGGCAAGGACCGCTCCTCCTCTTCGCTTTTGGCCGCCGCCAAGGACTCTCGCTCCGCCTCCGTCAACGCCCCTATCTCCAAGAATTCCAACGCTTCCGACGAGGAATCTGAAACGGACAGCGAGGAGTCTGATGTTAGTGGTTCCGATGGAGATGACACGTCGTGGATCTCGTGGTTCTGCAATTTGAGGGGAAATGAATTCTTCTGCGAGGTTGATGATGATTACATCCAGGACGACTTCAACCTGTGTGGATTAAGCAGTCAAGTGCCTTACTATGATTATGCTCTCGATTTGATTTTGGATGTTGAATCCTCCCATGGTGACATGTTTACTGAGGAACAGAATGAGTTAATTGAATCAGCAGCCGAGATGCTTTATGGTCTGATTCATGCCCGGTACATATTGACAAGCAAAGGAATGGCTGCAATGCTGGACAAGTACAAGAACTATGATTTTGGCAGATGCCCAAGAGTTTACTGCTCTGGACAACCTTGTATTCCAGTTGGTCAGTCAGACATCCCTAGGTCTAGTACTGTGAAAATATACTGCCCTAGGTGTGAAGACATTTACTATCCTCGGTCCAAGTATCAAGGCAACATTGACGGAGCTTATTTTGGAACTACATTTCCTCATCTGTTCCTGATGACCTATGGACAACTAAAGCCACAGAAACCATCGCAGAACTATGTTCCGAGAGTTTTTGGTTTCAAACTTCACAAGCCCTGA 858 0.4802 MYRERGGVGSKSEVTSVDRKRINDVLDKQLERSSPSTSRTAAINGKDRSSSSLLAAAKDSRSASVNAPISKNSNASDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYILTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCIPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQNYVPRVFGFKLHKP 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01641 285 PANTHER CASEIN KINASE II SUBUNIT BETA-2 1 284 - -
Cca06g01641 285 MobiDBLite consensus disorder prediction 1 94 - -
Cca06g01641 285 MobiDBLite consensus disorder prediction 29 75 - -
Cca06g01641 285 SUPERFAMILY Casein kinase II beta subunit 96 284 IPR035991 GO:0005956|GO:0019887
Cca06g01641 285 ProSitePatterns Casein kinase II regulatory subunit signature. 199 230 IPR000704 GO:0005956|GO:0019887
Cca06g01641 285 PRINTS Casein kinase II regulatory subunit family signature 98 114 IPR000704 GO:0005956|GO:0019887
Cca06g01641 285 PRINTS Casein kinase II regulatory subunit family signature 115 129 IPR000704 GO:0005956|GO:0019887
Cca06g01641 285 PRINTS Casein kinase II regulatory subunit family signature 170 191 IPR000704 GO:0005956|GO:0019887
Cca06g01641 285 PRINTS Casein kinase II regulatory subunit family signature 195 216 IPR000704 GO:0005956|GO:0019887
Cca06g01641 285 PRINTS Casein kinase II regulatory subunit family signature 217 238 IPR000704 GO:0005956|GO:0019887
Cca06g01641 285 PRINTS Casein kinase II regulatory subunit family signature 245 262 IPR000704 GO:0005956|GO:0019887
Cca06g01641 285 Gene3D - 196 270 - -
Cca06g01641 285 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 91 195 IPR016149 GO:0005956|GO:0019887
Cca06g01641 285 PANTHER CASEIN KINASE II SUBUNIT BETA 1 284 IPR000704 GO:0005956|GO:0019887
Cca06g01641 285 SMART CK_II_beta_2 98 281 IPR000704 GO:0005956|GO:0019887
Cca06g01641 285 MobiDBLite consensus disorder prediction 14 28 - -
Cca06g01641 285 Pfam Casein kinase II regulatory subunit 98 281 IPR000704 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01641 Cca-Chr6 31646313 31649323 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01641 K03115 - gmx:100799304 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01641 06 31646313 31649323 Cca06g01641 06 31646313 31649323 ECH
Cca06g01641 06 31646313 31649323 Cca11g01526 11 38387533 38390896 PCT
Cca11g01528 11 38415176 38418889 Cca06g01641 06 31646313 31649323 PCT