Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01517 ATGGCCGTCCAAGCTCAATATCCTTCCAATGTTCTCTTTCTAAACAGAAACGCCCAAGAAGGCCATGAATACTCGTTGCAACCGCAACCTGGAGGCCTCTTGAACCAGCCACACATGTTATACAACAACGACAATGGAAGTaacaacaacaacaacaaTTCCCGGAAGAGAGGAAGAGAAGACACGGCTGCTGCCAACACAATCACAACAAATTCCAATCTTATCAATCCTTTCTCTTTACAATCTCAGCCTCCACAACTTATTCATCTCTCTCAGCTTCATAATCACCAACAAAATGTAGTCTCCACTGGATTATGCTTGTCCTTCGATGACcaacaccttcatcaacaacaacaacaacaacaacaaatactacaacttcaccaacatcaatcacaacaacaacaTGCCTCTCACTCTTCCGCTTTCTTATCTAATTTATCCCAAAGCTTGGCTTCTCAAATCAAACAACAGAGAGATGAAGTTGATCAATTCCTCCAAGCCCAGGGAGAGCAACTGCGGCGAACATTGGCGGAGAAGAGGCAGAGGCATTACCGGGCGCTgctgagcgcggcggaggaggcggtggcgcagcggctgagggagaaagaagcggaagtggagAAGGCGACGCGCAAAAACGCGGAGCTAGAGGCACGCGCGGCCCAGCTGAGCGTGGAGGCGCAGGTGTGGCAGGCGAAGGCCCGGGCCCACGAGGCGACGGCGGCCTCCCTGCAGGCCCAGCTGCAGCAGACCATAATGTGCCAGGGCGGCGAGGAGGCGGGCGGCGGCGTGTCATGCGCGGTGGAGGAGCAGGCGGAGGACGCTGAGTCGGCTTACATCGACCCGGAGCGCGTGGCGGTGGCGGCGGCGCGTCCCAAATGCAGAGGGTGCGGGAAGCGCGTGGCCTCGGTGGTGGTTTTGCCGTGTCGGCACTTGTGCATCTGTACAGAATGCGATGCGCATTTCCGAGCGTGCCCCGTTTGTCTCACACCCAAGAATTCAACCGTTGAAGTTTTTCTCTCTTGA 1029 0.4723 MAVQAQYPSNVLFLNRNAQEGHEYSLQPQPGGLLNQPHMLYNNDNGSNNNNNNSRKRGREDTAAANTITTNSNLINPFSLQSQPPQLIHLSQLHNHQQNVVSTGLCLSFDDQHLHQQQQQQQQILQLHQHQSQQQHASHSSAFLSNLSQSLASQIKQQRDEVDQFLQAQGEQLRRTLAEKRQRHYRALLSAAEEAVAQRLREKEAEVEKATRKNAELEARAAQLSVEAQVWQAKARAHEATAASLQAQLQQTIMCQGGEEAGGGVSCAVEEQAEDAESAYIDPERVAVAAARPKCRGCGKRVASVVVLPCRHLCICTECDAHFRACPVCLTPKNSTVEVFLS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01517 342 PIRSF SBP1_RNase_bind 1 342 IPR017066 -
Cca11g01517 342 Pfam Zinc finger, C3HC4 type (RING finger) 294 334 - -
Cca11g01517 342 ProSiteProfiles Zinc finger RING-type profile. 295 329 IPR001841 -
Cca11g01517 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 342 IPR013083 -
Cca11g01517 342 MobiDBLite consensus disorder prediction 23 53 - -
Cca11g01517 342 MobiDBLite consensus disorder prediction 120 141 - -
Cca11g01517 342 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 341 IPR017066 -
Cca11g01517 342 Coils Coil 193 234 - -
Cca11g01517 342 MobiDBLite consensus disorder prediction 23 61 - -
Cca11g01517 342 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01517 Cca-Chr11 38270363 38272396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01517 295 331 Miscellaneous Gene Families AT2G21380 37.838 8.81e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01517 K19042 - gmx:100788924 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01636 06 31602654 31605164 Cca11g01517 11 38270363 38272396 PCT