Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01636 ATGGCCGTTCAAGCTCAATACCCGTCAAATGCACTCTTCCTAAACAGCAAAAACGCCCAAGAAGGACATGACTATTCATTGCAATCTCCGCCAGTAGAACTCCTTGATCATCATCAATCCCATATGTTATTCAACAAGGGAGGCACTAGTTCTCGAAAGAGAGGAAGAGAAACAACAGGGATAGCTCCGAACTTTGTAAATTCATTCTCTTTGCAACAATCCCAATCTCCACAACTCATAGACCTTACCCAACTTCATAATCAAAATAATGTAGTCTCCACCGGGTTACGCTTATCGTTCGGAGACcaacaacaattgcatcatcaacaacaacatcaTGGGTATCACTCCAATGCCTTCGAATCTCTATTATCCGAAGATTTGTCCTCGCAAATCAAACAACAGCGTGACGAAATAGATCAATTCCTTCAAGCCCAGGGGGAGCAATTGCGGCGGACTTTGACGGAGAAGAGGCAGAGACATTATCGGACGCTGGTGAGGACGGCGGAGGAAGCGGTGTTGCGGCAGCTAAGGGAGAAGGAGGCGGAGGTGGAGAGGGTGACGCGGCGGAACGCAGAGTTGGAGGCACGCGCGGCGCAGCTTAGCATGGAGGCGCAGGTTTGGGAGGCTAAGGCGAAGGCGCAGGAGGCGGCAGCGGCGGCACTGCAGGCGCAGCTGCAGCAGGCGATGATGGGTGATGAGGGCGGCGGCGGAGGGCTATCGTGCACCGGGGGCGATGCGGAAGATGCAGAGTCGGCACATGTAGACCCAGATCGCGTGGGGCCCAAATGCCGAGGGTGCGCCCAACGGTTAGCTTCGGTCGTGGTGTTGCCGTGTCGCCACCTCTGCTTCTGCGCCCAATGCGACACAAATTTTCGGGCCTGCCCAGTTTGCCTAACCGTTAAAAATTCAACGGTTCAAGTTTTTCTATCTTAG 936 0.5182 MAVQAQYPSNALFLNSKNAQEGHDYSLQSPPVELLDHHQSHMLFNKGGTSSRKRGRETTGIAPNFVNSFSLQQSQSPQLIDLTQLHNQNNVVSTGLRLSFGDQQQLHHQQQHHGYHSNAFESLLSEDLSSQIKQQRDEIDQFLQAQGEQLRRTLTEKRQRHYRTLVRTAEEAVLRQLREKEAEVERVTRRNAELEARAAQLSMEAQVWEAKAKAQEAAAAALQAQLQQAMMGDEGGGGGLSCTGGDAEDAESAHVDPDRVGPKCRGCAQRLASVVVLPCRHLCFCAQCDTNFRACPVCLTVKNSTVQVFLS 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01636 311 PIRSF SBP1_RNase_bind 1 311 IPR017066 -
Cca06g01636 311 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 310 - -
Cca06g01636 311 ProSiteProfiles Zinc finger RING-type profile. 264 298 IPR001841 -
Cca06g01636 311 Coils Coil 170 225 - -
Cca06g01636 311 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 310 IPR017066 -
Cca06g01636 311 Coils Coil 125 145 - -
Cca06g01636 311 Pfam Zinc finger, C3HC4 type (RING finger) 263 300 - -
Cca06g01636 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 311 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01636 Cca-Chr6 31602654 31605164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01636 264 300 Miscellaneous Gene Families AT2G21380 37.838 3.12e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01636 K19042 - gmx:100779548 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01636 06 31602654 31605164 Cca11g01517 11 38270363 38272396 PCT