Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01222 ATGCAATCTTCTTACTGTGTGAAGGAGGCAAAACCATGCGTGAGATGGGTTGAGAAATATTTCAAAGATTGCCTTTGCAATCTGAAAGATGACATATCCTTCGGTTTCGGGCTCACGAGTCTAGTATTCTGGGGAGTAGCTGAAATTCCTCAGATAATCACTATTTTTCATACCAAGAAAAGCCATGGAGTCTCCATCATCTTTCTCCTCACTTGGGTCGCTGGGGATATATGCAATTTGACGGGTTGCATTCTTGAACCAGCTACTTTGCCAACACAGTATTACACAGCTCTGCTTTACACAATCACAACGATCGTATTACTACTGCAAATAGTATATTATGATTACATCTGCAGATGGTACAAACATCGTCAGAAGGTCATCAACAACCAAAGGGATCCTGAAGAAGAGAAAAAACCATTGAAGCCACCAAAACCAAGTAACAAGTCTGCAATTCCAATACCAAATGGCACACCCAAAGCATCACCTAGACCGGAGTACTATTATATGTCAGCAAGATCATTGGCAGGGAGTGGTACACCACCGTGGGGAACCTACTTAAGAGCTGCTAAAAGTGGCCCTTCAGCCATGGCTTTGATAGACGACTCTTCTTCCGAGGATGAATCATCTCCAATTCCCTCTAATTATTCTCCAACCCAAGCTATGCCTATCCCACGTCCTATAGCTGGGAGTTATGGAACATTTCTAGCAGCTGCTGTTAATTTGCCTCTCAGGGGTAATGCTTTGAGAGAAGGGTACCTAGGAAGAAAGCTTTTGCAGGAGTACGAGACACATAGTGCATTTGGTCAATGGTTGGGATGGCTCATGGCTGCTATTTATATAAGTGGTCGGGTTCCTCAAATATGGTTGAATGTAAGTGTTAAATTAAACCATTTGTTTTCTTTTTCGGATTTTAACTATACTCTCTTTTTATAA 936 0.4188 MQSSYCVKEAKPCVRWVEKYFKDCLCNLKDDISFGFGLTSLVFWGVAEIPQIITIFHTKKSHGVSIIFLLTWVAGDICNLTGCILEPATLPTQYYTALLYTITTIVLLLQIVYYDYICRWYKHRQKVINNQRDPEEEKKPLKPPKPSNKSAIPIPNGTPKASPRPEYYYMSARSLAGSGTPPWGTYLRAAKSGPSAMALIDDSSSEDESSPIPSNYSPTQAMPIPRPIAGSYGTFLAAAVNLPLRGNALREGYLGRKLLQEYETHSAFGQWLGWLMAAIYISGRVPQIWLNVSVKLNHLFSFSDFNYTLFL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01222 311 MobiDBLite consensus disorder prediction 199 221 - -
Cca11g01222 311 PANTHER SEVEN TRANSMEMBRANE PROTEIN 1-RELATED 1 293 - -
Cca11g01222 311 MobiDBLite consensus disorder prediction 199 222 - -
Cca11g01222 311 MobiDBLite consensus disorder prediction 131 159 - -
Cca11g01222 311 SMART ctns 46 77 IPR006603 -
Cca11g01222 311 Pfam PQ loop repeat 32 88 IPR006603 -
Cca11g01222 311 PANTHER PQ-LOOP PROTEIN/TRANSMEMBRANE FAMILY PROTEIN 1 293 - -
Cca11g01222 311 Gene3D - 35 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01222 Cca-Chr11 31125653 31131282 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01222 K23678 - gmx:100787660 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01390 06 28789369 28793218 Cca11g01222 11 31125653 31131282 PCT