Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01390 ATGCCTCCCTCGTACTGCGTGAAAGAGAGTAAACCCTGTTTGGGTTGGGTTGAGAGATACTTCGATGATTGTCTCTGCAATATCAAAGATGACATATCATTTGGTTTTGGTTTCATAAGTCTAATATGTTGGGGAGTAGCAGAAATTCCTCAAATTATCACCAACTTTCGAGCTAAGTCCAGCCACGGTGTCTCCCTAGCCTTTCTCCTCACTTGGGTCGCAGGTGACATATTCAACCTCGTTGGTTGCCTTCTAGAGCCAGCCACGTTGCCGACTCAATACTACACAGCTCTGCTTTACACAATCACTACAATCGTGTTAGTACTGCAAAGTTTCTATTATGACTACATCTCTAAATGGGGCAAGCATCACCGGAAGATCAACATCGACAAGGTTTATGAAGAAGAGAAAAAACCTCTGAGACCGCAACCAGGCCTGGAATCTGCGATTCCAATACAAAATGAGGGACTCAAATCAACGTCTCGACGAGAGTACTGCTATAGGTCAGCGAGATCTTTGGCTGCTAATGATACTCCACCATTTGGTTCCTACTTGAGAGCTGCTAAAAGTGTCCCTTCAGCTGCCGAACTGAGCAATGATTCATCTTCTGACGATGAGGCACCTCCACGTTCTTCTACTGTAACACAACCTAGACCCATCCCCCGTTCTGTCCCTGCAAGCTATGGAACTTTTCTTGCAGCATCTATGAACTTGCCACGGCAGAGTAATGCTTTAAGATTATTCAATGGAAGGAAACTACTCTTGCAGGAGCACGACGTGCACAGTGCTTTGGGTCAATGGCTAGGATGGCTCATGGCTGTTATCTACATGGGTGGCCGGCTCCCTCAAATATGGTTGAATATTAAAAGAGGGAGCGTGGAGGGCTTAAATCCTCTCATGTTCATCTTTGCACTGATCGCCAATGCAACTTACGTGGGAAGCATTCTCGTACGAACTACCGAATGGGAAAGAATCAGAGCTAATATGCCGTGGCTGTTGGATGCCATAGGTTGTGTGGCATTGGACTTATTCATAATTTTGCAGTACGCCAACTATAGATTCCTTCGGAAGAAAGCAGGAAATGATGAAGCAGATTATGAAGACTACAAAGCAGCCAGCAAAACTTATGTGTCTTGA 1137 0.4521 MPPSYCVKESKPCLGWVERYFDDCLCNIKDDISFGFGFISLICWGVAEIPQIITNFRAKSSHGVSLAFLLTWVAGDIFNLVGCLLEPATLPTQYYTALLYTITTIVLVLQSFYYDYISKWGKHHRKINIDKVYEEEKKPLRPQPGLESAIPIQNEGLKSTSRREYCYRSARSLAANDTPPFGSYLRAAKSVPSAAELSNDSSSDDEAPPRSSTVTQPRPIPRSVPASYGTFLAASMNLPRQSNALRLFNGRKLLLQEHDVHSALGQWLGWLMAVIYMGGRLPQIWLNIKRGSVEGLNPLMFIFALIANATYVGSILVRTTEWERIRANMPWLLDAIGCVALDLFIILQYANYRFLRKKAGNDEADYEDYKAASKTYVS 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01390 378 MobiDBLite consensus disorder prediction 195 222 - -
Cca06g01390 378 PANTHER PQ-LOOP REPEAT FAMILY PROTEIN / TRANSMEMBRANE FAMILY PROTEIN 3 375 - -
Cca06g01390 378 Gene3D - 35 124 - -
Cca06g01390 378 Gene3D - 265 367 - -
Cca06g01390 378 PANTHER SEVEN TRANSMEMBRANE PROTEIN 1-RELATED 3 375 - -
Cca06g01390 378 MobiDBLite consensus disorder prediction 195 220 - -
Cca06g01390 378 Pfam PQ loop repeat 32 88 IPR006603 -
Cca06g01390 378 Pfam PQ loop repeat 264 321 IPR006603 -
Cca06g01390 378 SMART ctns 278 309 IPR006603 -
Cca06g01390 378 SMART ctns 46 77 IPR006603 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01390 Cca-Chr6 28789369 28793218 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01390 K23678 - gmx:100815310 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01390 06 28789369 28793218 Cca06g01390 06 28789369 28793218 ECH
Cca06g01390 06 28789369 28793218 Cca11g01222 11 31125653 31131282 PCT