Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01220 ATGGCACCTACCTTATTCTTCCTCCTCTTGTCCCTCCAAGCCACCAGCACCACCACAACCCAACAACGTTTCAAAGAAGCGCCAAAATTCTACAACTCCCCCACGTGCGACACCCTCCAGCGGCACCCCGACCACACGTGCCCCGCCAACGCAGTCCACGTGGCAATGACCCTCGACGTGGCCTACCTCCGCGGCTCCATGGCCGCAATCCTCTCCGTGCTGCAGCACACTTCCTGCCCGGAAAACATAATCTTCCATTTCGTCACCGCCGCGTCGAAGCCCTCCTCCGCCGCAACGCTCAACAAAACACTAACCACCTCCTTCCCCTATTTAAACTTCCAAATCTACCCCTTCGACGACGACGCCGTTTCGCGCCTCATCTCAACTTCAATACGCTCCGCACTAGATTGCCCCCTCAACTACGCGCGAACCTACCTCGCGAACCTTCTCCCTCGCTGCGTTTCAAAACTCGTGTACCTCGACTCCGACTTGGTCCTCGTCGACGACATTGCCAAGCTCGCCGCCACGCCGCTCCCCGGTGACGCCGTCCTCGCCGCACCGGAGTACTGCTCCGCCAACTTCTCCGCCTACTTCACGCCCTCGTTCTGGGCGAACCCCTCGCTGTCGCTCGCGCTGTTCGCGGACCGGCGGAGGCCGTGCTACTTCAACACCGGCGTGATGGTGAAGAGAATGCGGATCTACGAGCTCGGGTCGCTGCCTCCGTTTCTGCTGGTGTTCGCGGGGAAGATTGCCGCGGTGGATCACCGGTGGAACCAGCACGGGCTCGGCGGGGATAACTTTCGCGGGCTTTGTCGGGACCTGCATCCCGGGCCCGTGAGCCTGCTGCATTGGAGTGGGAAGGGGAAGCCGTGGGCCCGGCTCGACGCCAACAGGCCCTGCCCTTTGGATGCGCTGTGGGCTCCCTATGACTTGCTCGAGACTCCTTTCGCTTTTCAGGCGTAG 963 0.6158 MAPTLFFLLLSLQATSTTTTQQRFKEAPKFYNSPTCDTLQRHPDHTCPANAVHVAMTLDVAYLRGSMAAILSVLQHTSCPENIIFHFVTAASKPSSAATLNKTLTTSFPYLNFQIYPFDDDAVSRLISTSIRSALDCPLNYARTYLANLLPRCVSKLVYLDSDLVLVDDIAKLAATPLPGDAVLAAPEYCSANFSAYFTPSFWANPSLSLALFADRRRPCYFNTGVMVKRMRIYELGSLPPFLLVFAGKIAAVDHRWNQHGLGGDNFRGLCRDLHPGPVSLLHWSGKGKPWARLDANRPCPLDALWAPYDLLETPFAFQA 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01220 320 PANTHER HEXOSYLTRANSFERASE 228 320 - -
Cca11g01220 320 PANTHER HEXOSYLTRANSFERASE 5 228 - -
Cca11g01220 320 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 228 320 - -
Cca11g01220 320 SUPERFAMILY Nucleotide-diphospho-sugar transferases 52 311 IPR029044 -
Cca11g01220 320 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 53 300 IPR029044 -
Cca11g01220 320 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 5 228 - -
Cca11g01220 320 Pfam Glycosyl transferase family 8 233 293 IPR002495 GO:0016757
Cca11g01220 320 Pfam Glycosyl transferase family 8 53 228 IPR002495 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01220 Cca-Chr11 31079973 31082066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01220 6 316 Glycosyltransferase AT3G50760 66.071 8.50e-161 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01220 K20893 - gmx:100805007 535.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01389 06 28782825 28784458 Cca11g01220 11 31079973 31082066 PCT