Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01389 ATGGGCAGCGGGGCATTCAAGCAGTGTTCCTTCACATTGTTATTCCATTTGTGGCTCCTTCTCATCATTTCCAGCAATCATGCCACTGCTCAGCGCTTCAAGCAAGCACCCAAATTCTACAACTCCCCCAACTGCGCCACCATTCTGCAACCAGAGGGCCACACGTGTTCCGAGGACGCCGTCCACGTGGCCATGACACTCGACACCACCTACCTCCGGGGCTCCATGGCCGCCATCCTCTCCGTCCTCCAGCACTCCTCCTGCCCCGAAAACATCATCTTCCACTTCGTCACCGCCGCCTCCTCCTCCGCCGCCGCCCCCCTCAACCGCACGCTCTCCACCTCCTTCCCCTACCTCAAATTCCAAATCTACCCCTTCCGCGACGGCGCAGTCGCCGGCCTCATCTCCACCTCCATCCGCTCCGCCCTCGACTGCCCCCTCAACTACGCCCGCAACTACATGCCCGACCTCCTCCCCTCCTGCCTCCGCAAAGTCGTCTACCTCGACTCCGACCTCGTCCTCGTCGACGACATCGCCAAACTCGCCGCCACGCCCCTCGGAGACGACCCTAACACCGTCCTGGCGGCGCCGGAGTACTGCAACGCCAACTTCAGCGCGTATTTCACCCCCTCCTTCTGGTCCAACCCCTCGCTCTCCCTCACGTTCGCGGGCCGCAAGCCCTGCTACTTCAACACCGGCGTCATGGTGATCGACTTGCAGCGGTGGCGCGCCGGCGACTACACCGCCAAGATCCAGGACTGGATGGAGCTCCAGAAGAGAATGCGGATCTACGAGTTGGGGTCCTTGCCGCCTTTTCTTCTGGTATTCGCCGGGAACATAGCCCCCGTGGATCACCGGTGGAACCAGCATGGGCTTGGCGGAGATAACTTCCGTGGGCTTTGTAGAGACTTGCATCCGGGCCCCGTTAGCCTCTTGCATTGGAGTGGCAAGGGCAAACCCTGGGCCCGCCTCGACGCCAACCGCCCTTGTCCCTTGGACGCCTTATGGGCTCCCTACGATCTTCTTCAAACTCCCTACGCTCTCGAAGCCTAG 1053 0.6154 MGSGAFKQCSFTLLFHLWLLLIISSNHATAQRFKQAPKFYNSPNCATILQPEGHTCSEDAVHVAMTLDTTYLRGSMAAILSVLQHSSCPENIIFHFVTAASSSAAAPLNRTLSTSFPYLKFQIYPFRDGAVAGLISTSIRSALDCPLNYARNYMPDLLPSCLRKVVYLDSDLVLVDDIAKLAATPLGDDPNTVLAAPEYCNANFSAYFTPSFWSNPSLSLTFAGRKPCYFNTGVMVIDLQRWRAGDYTAKIQDWMELQKRMRIYELGSLPPFLLVFAGNIAPVDHRWNQHGLGGDNFRGLCRDLHPGPVSLLHWSGKGKPWARLDANRPCPLDALWAPYDLLQTPYALEA 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01389 350 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 8 350 - -
Cca06g01389 350 Pfam Glycosyl transferase family 8 62 323 IPR002495 GO:0016757
Cca06g01389 350 SUPERFAMILY Nucleotide-diphospho-sugar transferases 61 341 IPR029044 -
Cca06g01389 350 PANTHER HEXOSYLTRANSFERASE 8 350 - -
Cca06g01389 350 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 62 330 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01389 Cca-Chr6 28782825 28784458 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01389 13 348 Glycosyltransferase AT3G50760 70.206 0.0 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01389 K20893 - gmx:100783054 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01389 06 28782825 28784458 Cca06g01389 06 28782825 28784458 ECH
Cca06g01389 06 28782825 28784458 Cca11g01220 11 31079973 31082066 PCT