Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01215 ATGAGCGTTGTGAATCTCAACGCATGGGCACGCCCCAGCTTCATTATAAATCAAGCCACGAAACCCAAATCCTGGGTTCTGTTTCACGGCGTTAATAACTCGCACCTTTCCACCGTTATTAAACGGCGAAGGAGGGTGGCTTCGATCTCGGTCTCCGCCGTTTTGACGAGAGAGGACGCCGTGGAAATGGAAGAGAAACCGGCGTTCAACTTCGAGTCCTACATGTTGAACAAAGCGGCCGCAGTGAACAAGGCCCTAGACGACGCCGTTTCGCTCCGCGACCCGCTGCGCATCCACGAGGCCATGCGCTACTCGCTCCTCGCCGGCGGGAAGCGCGTGCGCCCGGTGCTCTGCCTCGCCGCCTGCGAGCTCGTCGGCGGAGCGGAAACCACCGCGATGGCCGCCGCCTGCGCCATAGAGATGATCCACACCATGTCGCTCATCCACGACGACCTCCACTGCATGGACAACGACGACCTCCGCCGCGGCAAGCCCACCAACCACAAGGTCTTCGGCGAGAACGTCGCTGTCCTCGCCGGTGACTCCCTCCTGGCCTTCGCCTTTGAGCACGTCGCAATCGCCACTCCGGCGACCCCGACGAGCTCCTCGGTGCAGATCATCCGCGCGATCGGCGAGCTCGCGCGGTGCATCGGCACCGAGGCCCCCGGCCAGGTCGTCGACATTAATTGCGAGGGCCTGGCCGATGTGGGACTCGACCGGCTGGAGTTCATTCACATCCACAAGACCGCCGCGCTCCTGGAGGGCGCGGTGGTCCTCGGCGCCATCCTGGGCGGTGGCGCCGATGAGGAGGTGGAGAAATTGAGGAAGTTTGCTCAGTACATAGGGTTGCTGTTTCAGGTTGTGGATGATATTCTTGATGTTACAAAGTCTTCCCATGAATTGGGGAAGACTGCAGGGAAGGACCTTGTGGCTGATAAGGTTACTTACCCCAAGCTTTTGGGGCTTGAGAAATCTAAGGAGTTTGCTGCGAAATTGAACAAGGATGCTCTGGCTCTGCTTGCTGGGTTTGACCCTGTTAAGGCTGCTCCTTTGATTGCTTTAGCCAACTATATTGCTTATAGGCAGAACTAG 1092 0.587 MSVVNLNAWARPSFIINQATKPKSWVLFHGVNNSHLSTVIKRRRRVASISVSAVLTREDAVEMEEKPAFNFESYMLNKAAAVNKALDDAVSLRDPLRIHEAMRYSLLAGGKRVRPVLCLAACELVGGAETTAMAAACAIEMIHTMSLIHDDLHCMDNDDLRRGKPTNHKVFGENVAVLAGDSLLAFAFEHVAIATPATPTSSSVQIIRAIGELARCIGTEAPGQVVDINCEGLADVGLDRLEFIHIHKTAALLEGAVVLGAILGGGADEEVEKLRKFAQYIGLLFQVVDDILDVTKSSHELGKTAGKDLVADKVTYPKLLGLEKSKEFAAKLNKDALALLAGFDPVKAAPLIALANYIAYRQN 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01215 363 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE, CHLOROPLASTIC 1 363 - -
Cca11g01215 363 Gene3D Farnesyl Diphosphate Synthase 63 363 IPR008949 -
Cca11g01215 363 SFLD Isoprenoid Synthase Type I 74 361 - -
Cca11g01215 363 Pfam Polyprenyl synthetase 98 328 IPR000092 GO:0008299
Cca11g01215 363 ProSitePatterns Polyprenyl synthases signature 1. 147 163 IPR033749 -
Cca11g01215 363 ProSitePatterns Polyprenyl synthases signature 2. 281 293 IPR033749 -
Cca11g01215 363 SUPERFAMILY Terpenoid synthases 73 347 IPR008949 -
Cca11g01215 363 SFLD Polyprenyl Transferase Like 74 361 - -
Cca11g01215 363 CDD Trans_IPPS_HT 94 361 IPR000092 GO:0008299
Cca11g01215 363 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 1 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01215 Cca-Chr11 30839208 30841903 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01215 K13789 - gmx:100785539 498.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01384 06 28727302 28728784 Cca11g01215 11 30839208 30841903 PCT