Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01384 ATGACTTGGGCGAACCTTATGCTTAACACCACACTTTCACCTCTCATTCCCCTTTACCACACTCTCTCATCTCTTCCCATTGCCCCAAAACGCGCAAGAGATAAACTAGTCCTATTTTCTTCTTCTTCCTCTCTTCCCTCTTTCTCCGTCTCCGCTGTGTCCACCAAGGAAGACACCGCGCATGTCATAACCCAAGACACCTTCGATTTCAAGGCCTACATGCTCCACAAGGCCAACACAGTCAACCAAGCCCTCGACGCAGCCATTGCGCTCAGAGATCCGGAGAAGATCCACCAAGCCATGCGCTACTCCCTCCTCGCCGGCGGCAAGAGGGTCCGCCCGCTCCTCTGCATCGCCGCCTGCGAGCTCGTCGGGGGGGCCGAGGAGACCGCCATCCCCGCCGCCTGCGCGGTGGAGATGATCCACACCATGTCGCTCATCCACGACGACCTCCCCTGCATGGACAACGACGACCTCCGCCGCGGCAAGCCCACCAACCACAAGGTCTTCGGCGAGGACGTGGCGGTCCTGGCCGGCGACGCGCTCCTGGCCTTCGCCTTCGAGCACGTGGCGGTGGCCACGAAAGGGGTGGCGGCGGCGCGTGTGGTTCGCGCGGTTGGGGAGCTGGCGAAATCCATCGGCGGGGAAGGGCTTGTGGCGGGACAAGTGGTGGATATAGATTCGGAAGGGGTATCGAATGTGGGGTTGGAGAGGTTGGAGTTCATTCACCTTCACAAAACGGCGGCGTTGCTGGAGGCGGCGGTTGTGCTGGGGGCCATCATGGGAGGTGGAACGGAGGAGGAGGTTGAGAAGTTAAGGAAGTTCGCGAGGAGCATTGGCTTGCTGTTTCAGGTTGTTGATGACATTCTGGATGTGACGAAATCGTCGGAGGAATTGGGGAAAACGGCGGGGAAGGACTTGGTGGCGGATAAGGTGACGTATCCTAAGCTTTTGGGGATACACGAGTCTAAGGAGTTTGCGGATAAGTTGATTGAGGACGCCAAGGAGCAATTGGCAGGCTTCGATCCTCTTAAGGCTGCTCCCTTGTTTGCTTTAACCAATTACATTGCTTACAGGCAAAATTAA 1086 0.5755 MTWANLMLNTTLSPLIPLYHTLSSLPIAPKRARDKLVLFSSSSSLPSFSVSAVSTKEDTAHVITQDTFDFKAYMLHKANTVNQALDAAIALRDPEKIHQAMRYSLLAGGKRVRPLLCIAACELVGGAEETAIPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHVAVATKGVAAARVVRAVGELAKSIGGEGLVAGQVVDIDSEGVSNVGLERLEFIHLHKTAALLEAAVVLGAIMGGGTEEEVEKLRKFARSIGLLFQVVDDILDVTKSSEELGKTAGKDLVADKVTYPKLLGIHESKEFADKLIEDAKEQLAGFDPLKAAPLFALTNYIAYRQN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01384 361 SFLD Isoprenoid Synthase Type I 72 359 - -
Cca06g01384 361 Pfam Polyprenyl synthetase 95 335 IPR000092 GO:0008299
Cca06g01384 361 Gene3D Farnesyl Diphosphate Synthase 62 361 IPR008949 -
Cca06g01384 361 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE, CHLOROPLASTIC 39 361 - -
Cca06g01384 361 SUPERFAMILY Terpenoid synthases 71 341 IPR008949 -
Cca06g01384 361 ProSitePatterns Polyprenyl synthases signature 1. 146 162 IPR033749 -
Cca06g01384 361 ProSitePatterns Polyprenyl synthases signature 2. 279 291 IPR033749 -
Cca06g01384 361 CDD Trans_IPPS_HT 93 359 IPR000092 GO:0008299
Cca06g01384 361 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 39 361 - -
Cca06g01384 361 SFLD Polyprenyl Transferase Like 72 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01384 Cca-Chr6 28727302 28728784 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01384 K13789 - gmx:100778289 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01384 06 28727302 28728784 Cca06g01384 06 28727302 28728784 ECH
Cca06g01384 06 28727302 28728784 Cca11g01215 11 30839208 30841903 PCT